Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004657.1 Length=2605 Score E Sequences producing significant alignments: (Bits) Value seq16 192 1e-45 seq13 161 2e-36 seq11 150 3e-33 >seq16 Length=188620566 Score = 192 bits (212), Expect = 1e-45 Identities = 246/336 (73%), Gaps = 10/336 (3%) Strand=Plus/Minus Query 1725 CTTTAATTTGAACTGGCTTGCCGTATTTGCAATTTGACTGCCAGTCCCTTTGGGACCCGA 1784 |||| || ||||| || || | ||| ||||| |||| |||||||| ||||| | || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1785 TTAATTCTTTCCAGTGCTTTAACTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTAT 1844 |||||| |||||||| ||||| | || ||| | | |||| |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA----ACATTGTGGGTTA--ACGTTATCAATAACGTTAT 2249220 Query 1845 ATTCCACTTCGTTTGAGAACACTCTGGAATTGAAGTCTAGGTGTCCACTAAGATAATTAT 1904 ||||||| ||||| ||||| || | | ||| ||||||| | ||||| | |||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1905 GTGGGCCTAATGCCCGAGCCCACATCGTCTTCCCTGTTCTTGAATCACCTTCTACTATGA 1964 || || |||| | |||||||| ||||| || ||||||||||||||||| | ||| | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1965 --GACTTACTGGTCTATCTGGGCGCGCAGCGGAACCTCTTCCAAAATAATGATCTGCCCA 2022 |||| | ||||| |||||| | |||| | | |||||||| ||||||||| Sbjct 2249099 TTGACTGA--GGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 2023 TACTTGCATCTGCTCTGGAACGTTAGTGAACGAGGA 2058 | |||||| | ||| ||||| ||||| || || Sbjct 2249041 TTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq13 Length=197258317 Score = 161 bits (178), Expect = 2e-36 Identities = 259/367 (71%), Gaps = 14/367 (4%) Strand=Plus/Plus Query 1691 CCAGGATTGCAAAGCACGATTGATGGGATTCCTCCTTTAATTTGAACTGGCTTGCCGTAT 1750 || || ||||| || | ||||| ||| || |||||||| | || ||||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1751 TTGCAATTTGACTGCCAGTCCCTTTGGGACCCGATTAATTCTTTCCAGTGCTTTAACTTT 1810 ||||| || |||||||| | ||| | || || || |||||||||||||| || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAA---- 89851316 Query 1811 AGATAGTGCGGTGCGACGTCATCAATGACGTTATATTCCACTTCGTTTGAGAACAC--TC 1868 || || |||| | |||||| |||| ||| || || || ||||||||||| || | Sbjct 89851317 --GTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1869 TGGAATTGAAGTCTAGGTGTCCACTAAGATAATTATGTGGGCCTAATGCCCGAGCCCACA 1928 | |||| ||| | || |||| | || |||||| || || | | ||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1929 TCGTCTTCCCTGTTCTTGAATCACCTTCTACTATGA--GACTTACTGGTCT-ATCTGGGC 1985 | || || ||||| || ||||||| ||||| || | ||||| |||||| ||| || | Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTT--TGGTCTCATC-GGCC 89851491 Query 1986 GCGCAGCGGAACCTCTTCCAAAATAATGATCTGCCCATACTTGCATCTGCTCTGGAACGT 2045 ||||||||| | |||||| || |||||||||| ||||| | ||||| || | Sbjct 89851492 GCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACAT 89851551 Query 2046 TAGTGAA 2052 ||||||| Sbjct 89851552 TAGTGAA 89851558 >seq11 Length=168460249 Score = 150 bits (166), Expect = 3e-33 Identities = 259/372 (70%), Gaps = 12/372 (3%) Strand=Plus/Minus Query 1684 ACCCTCACCAGGATTGCAAAGCACGATTGATGGGATTCCTCCTTTAATTTGAACTGGCTT 1743 |||| | || || ||||| |||| ||||| ||| || |||||||| | || |||||| Sbjct 165527610 ACCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTT 165527551 Query 1744 GCCGTATTTGCAATTTGACTGCCAGTCCCTTTGGGACCCGATTAATTCTTTCCAGTGCTT 1803 |||||||||||| | |||||||| | | ||| | || || || |||||||||||| | Sbjct 165527550 GCCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCAT 165527491 Query 1804 TAACTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTATATTCCACTTCGTTTGAGAA 1863 || || || |||| | |||||| |||| ||| || || | | ||||||||| Sbjct 165527490 GAA------GTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAA 165527437 Query 1864 CACTCTGGAATTGAAGTCTAGGTGTCCACTAAGATAATTATGTGGGCCTAATGCCCGAGC 1923 ||| | ||| ||| | || |||| | || |||||| || || | | || Sbjct 165527436 GACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGC 165527377 Query 1924 CCACATCGTCTTCCCTGTTCTTGAATCACCTTCTACTAT--GAGACTTACTGGTCT-ATC 1980 |||||| || || | ||| || |||| ||||| || || ||||| |||||| ||| Sbjct 165527376 CCACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTT--TGGTCTCATC 165527319 Query 1981 TGGGCGCGCAGCGGAACCTCTTCCAAAATAATGATCTGCCCATACTTGCATCTGCTCTGG 2040 || |||||||||| | ||||| || |||||||||| |||||| | ||||| Sbjct 165527318 -GGCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGG 165527260 Query 2041 AACGTTAGTGAA 2052 || |||||||| Sbjct 165527259 TACATTAGTGAA 165527248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8227066431408