Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004659.1 Length=2603 Score E Sequences producing significant alignments: (Bits) Value seq16 159 6e-36 seq13 156 7e-35 seq11 150 3e-33 >seq16 Length=188620566 Score = 159 bits (176), Expect = 6e-36 Identities = 244/341 (72%), Gaps = 20/341 (6%) Strand=Plus/Minus Query 1718 CTTTTATCTGAACGGGCTTGCCGTATTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCA 1777 |||| |||||||| || || | ||| ||||| |||| |||||||| | || || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1778 GAAGTTCTTTCCAGTGTTTTAGCTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTAT 1837 | | ||| ||||||||||||| | || ||| | | |||| |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA----ACATTGTGGGTTA--ACGTTATCAATAACGTTAT 2249220 Query 1838 ATTCCACTTCGTTCGAGTAGACTCGTGGG-TTGAAGTCCAGATGTCCACTAAGATAGTTA 1896 ||||||| ||||| ||| | || ||| || || ||||| | || ||||| | ||| ||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAAC-CGTAGGATTCAAGTCTAAATAACCACTTAAATAATTA 2249161 Query 1897 TGTGGGCCTAAGGCACGAGCCCACATCGTCTTCCCTGTTCTCGAATCACCTTCCACTATG 1956 ||| || || | | |||||||| ||||| || ||||| ||||||||||| | ||| Sbjct 2249160 TGTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATT 2249101 Query 1957 A--GACTCATTGGTCTATCTGGCCGCGCAGCAGAACCTCTC----CCAAAATATTCATCG 2010 | |||| | ||||| ||| || | ||| || || |||||| ||||| Sbjct 2249100 ATTGACTGA--GGTCTCAATGGGCGTGAAGC----GCTGTCGGATGAAAAATAATCATCT 2249047 Query 2011 GCCCACTCTTGCATATCGTCTGGCACGTTAGTGAACGAGGA 2051 ||||| | ||||||| | | ||| ||||| ||||| || || Sbjct 2249046 GCCCATTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq13 Length=197258317 Score = 156 bits (172), Expect = 7e-35 Identities = 259/367 (71%), Gaps = 14/367 (4%) Strand=Plus/Plus Query 1684 CCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTTATCTGAACGGGCTTGCCGTAT 1743 || || ||||| || | ||||| ||| || |||||||| | || |||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1744 TTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGTTTTAGCTTT 1803 ||||| || |||||||| | | || || || | || ||||||||||| || | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGA----- 89851315 Query 1804 AGATAGTGCGGTGCGACGTCATCAATGACGTTATATTCCACTTCGTTCGAGTAGACTCGT 1863 || || || |||| | |||||| |||| ||| || || || ||||| ||| ||||| | Sbjct 89851316 AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1864 GGGT--TGAAGTCCAGATGTCCACTAAGATAGTTATGTGGGCCTAAGGCACGAGCCCACA 1921 | ||| ||||| ||| |||| | ||||||||| || || | | ||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1922 TCGTCTTCCCTGTTCTCGAATCACCTTCCACTATGA--GACTCATTGGTCT-ATCTGGCC 1978 | || || ||||| || ||||||| ||| | || | |||| ||||||| ||| |||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATC-GGCC 89851491 Query 1979 GCGCAGCAGAACCTCTCCCAAAATATTCATCGGCCCACTCTTGCATATCGTCTGGCACGT 2038 ||||||| | | ||||| ||| ||| ||||| | ||||| || ||||| || | Sbjct 89851492 GCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACAT 89851551 Query 2039 TAGTGAA 2045 ||||||| Sbjct 89851552 TAGTGAA 89851558 >seq11 Length=168460249 Score = 150 bits (166), Expect = 3e-33 Identities = 263/377 (70%), Gaps = 22/377 (6%) Strand=Plus/Minus Query 1677 ACCCTCACCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTTATCTGAACGGGCTT 1736 |||| | || || ||||| |||| ||||| ||| || |||||||| | || ||||| Sbjct 165527610 ACCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTT 165527551 Query 1737 GCCGTATTTGCAATTTGACTGCCAGTCCTTC--TGGGCCCCCAGAAGTTCTTTCCAGTGT 1794 |||||||||||| | |||||||| | ||| || || || | || |||||||||| Sbjct 165527550 GCCGTATTTGCAGTAAGACTGCCAAT--TTCGTTGAGCTCCAATAAACTCTTTCCAGT-- 165527495 Query 1795 TTTAGCTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTATATTCCACTTCGTTCGAG 1854 || | | || || |||| | |||||| |||| ||| || || | | ||| ||| Sbjct 165527494 ----GCATGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAG 165527439 Query 1855 TAGACTCGTGGGTTGAAGTCCAGATGTCCACTAAGATAGTTATGTGGGCCTAAGGCACGA 1914 ||||| | |||| ||||| ||| |||| | ||||||||| || || | | Sbjct 165527438 AAGACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTT 165527379 Query 1915 GCCCACATCGTCTTCCCTGTTCTCGAATCACCTTCCACTATGA-----GACTCATTGGTC 1969 |||||||| || || | ||| || |||| ||||| ||||| |||| |||||| Sbjct 165527378 GCCCACATTGTTTTGCTTGTCCTGGAATTACCTT---TTATGATTGTTGACT--TTGGTC 165527324 Query 1970 T-ATCTGGCCGCGCAGCAGAACCTCTCCCAAAATATTCATCGGCCCACTCTTGCATATCG 2028 | ||| ||||||||||| | | ||||| ||| ||| ||||| ||||||| || Sbjct 165527323 TCATC-GGCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCT 165527265 Query 2029 TCTGGCACGTTAGTGAA 2045 ||||| || |||||||| Sbjct 165527264 TCTGGTACATTAGTGAA 165527248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8220666535312