Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004661.1 Length=2612 Score E Sequences producing significant alignments: (Bits) Value seq16 145 1e-31 seq11 134 2e-28 seq13 132 8e-28 >seq16 Length=188620566 Score = 145 bits (160), Expect = 1e-31 Identities = 237/337 (70%), Gaps = 12/337 (4%) Strand=Plus/Minus Query 1727 CTTTAATTTGAACTGGCTTGCCGTACTTACAATTTGACTGCCAGTCCTTCTG-GCCCCAG 1785 |||| || ||||| || || | |||||| || |||| |||||||| | || || ||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1786 AAAGATTCTTTCCAGTGCTTTAGCTTTAGATATTGCGGTGCGACGTCATCAATGACGTTA 1845 | |||| |||||||| |||| | |||| || |||| |||||| |||||| Sbjct 2249273 GTA-ATTCCTTCCAGTGTTTTAA------ACATTGTGGGTTAACGTTATCAATAACGTTA 2249221 Query 1846 TACTCCACTTCGTTCGAATAGACTCTTGGGTTGAAGTCCAGATGTCCACTAAGATAATTA 1905 || ||||| ||||| || | || | || || ||||| | || ||||| | ||||||| Sbjct 2249220 TATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTA 2249161 Query 1906 TGTGGGCCTAACGCACGAGCCCACATCGTCTTCCCTGTTCTCGAATCACCTTCCACGATG 1965 ||| || || | | |||||||| ||||| || ||||| ||||||||||| | || Sbjct 2249160 TGTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATT 2249101 Query 1966 ATACTAAC--AGGTCTCTCTGGGCGCGCAGCGGAATCACACCCAAAATAATCATCCGCCC 2023 || | || ||||||| |||||| | |||| || | |||||||||||| |||| Sbjct 2249100 AT--TGACTGAGGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCC 2249043 Query 2024 ACTCTTGCATCCTCTCCGGCACGTTAGTGAATGAGGA 2060 | | |||||| | || ||||| ||||| || || Sbjct 2249042 ATTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq11 Length=168460249 Score = 134 bits (148), Expect = 2e-28 Identities = 328/487 (67%), Gaps = 20/487 (4%) Strand=Plus/Minus Query 1686 ACCCTCACCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTT 1745 |||| | || || ||||| |||| ||||| ||| || |||||||| | || |||||| Sbjct 165527610 ACCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTT 165527551 Query 1746 GCCGTACTTACAATTTGACTGCCAGTCCTTC--TG-GCCCCAGAAAGATTCTTTCCAGTG 1802 |||||| || || | |||||||| | ||| || || ||| | | | ||||||||||| Sbjct 165527550 GCCGTATTTGCAGTAAGACTGCCAAT--TTCGTTGAGCTCCA-ATAAACTCTTTCCAGTG 165527494 Query 1803 CTTTAGCTTTAGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGA 1862 | | | || ||||| |||| | |||||| |||| ||| || || | | ||| || Sbjct 165527493 CATGA-----AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGA 165527440 Query 1863 ATAGACTCTTGGGTTGAAGTCCAGATGTCCACTAAGATAATTATGTGGGCCTAACGCACG 1922 ||||| || |||| ||||| ||| |||| | || |||||| || || | | Sbjct 165527439 GAAGACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCT 165527380 Query 1923 AGCCCACATCGTCTTCCCTGTTCTCGAATCACCTTCCACGATGAT--ACTAACAGGTCTC 1980 |||||||| || || | ||| || |||| ||||| | ||| | ||| |||||| Sbjct 165527379 TGCCCACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTC 165527322 Query 1981 TCTGGGCGCGCAGCGGAATCACACCCAAAATAATCATCCGCCCACTCTTGCA--TCCTCT 2038 || |||||||||| | ||||| || ||| ||||| ||||||| || ||| Sbjct 165527321 ATCGGCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCT 165527262 Query 2039 CCGGCACGTTAGTGAATGAGGAGAGTTGAAACGGAGGAACCCACGGTGACGGAGCCTTTG 2098 || || |||||||| || | | || ||| ||||| || | | || || Sbjct 165527261 --GGTACATTAGTGAAGCTTGATAACGGGAATGGACTTACCCATGGAGCTGTAGGGATTT 165527204 Query 2099 CGAATATTCTCTCTAGGTTTGAGCGGATGTTATGATTTTGCAGGACAAAATCTTTGGGTT 2158 | | | ||| || ||||| || |||||| |||| || | | ||| ||| |||||| Sbjct 165527203 CATAGACTCTATCCAGGTTGTAGTTGATGTTGTGATGCTGTAACAGAAAGTCTCTGGGTT 165527144 Query 2159 GTTCTTC 2165 |||| || Sbjct 165527143 GTTCATC 165527137 >seq13 Length=197258317 Score = 132 bits (146), Expect = 8e-28 Identities = 256/369 (69%), Gaps = 18/369 (5%) Strand=Plus/Plus Query 1693 CCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGTAC 1752 || || ||||| || | ||||| ||| || |||||||| | || ||||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1753 TTACAATTTGACTGCCAGTCCTTCTG-GCCCCAGAAAGATTCTTTCCAGTGCTTTAGCTT 1811 || || || |||||||| | | || || ||| || | |||||||||||||| | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAA-ACTCTTTCCAGTGCTTGA---- 89851315 Query 1812 TAGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATAGACTCT 1871 || ||||| |||| | |||||| |||| ||| || || || ||||| || ||||| | Sbjct 89851316 -AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTT 89851373 Query 1872 T--GGGTTGAAGTCCAGATGTCCACTAAGATAATTATGTGGGCCTAACGCACGAGCCCAC 1929 | |||| ||||| ||| |||| | || |||||| || || | | |||||| Sbjct 89851374 TTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCAC 89851433 Query 1930 ATCGTCTTCCCTGTTCTCGAATCACCTTCCACGATGAT--ACTAACAGGTCTCTCTGGGC 1987 || || || ||||| || ||||||| ||| | ||| || ||| |||||| || | Sbjct 89851434 ATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCC 89851491 Query 1988 GCGCAGCGGAATCACACCCAAAATAATCATCCGCCCACTCTTGCA--TCCTCTCCGGCAC 2045 ||||||||| | ||||| || ||| ||||| | ||||| || ||| || || Sbjct 89851492 GCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCT--GGTAC 89851549 Query 2046 GTTAGTGAA 2054 |||||||| Sbjct 89851550 ATTAGTGAA 89851558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8249466067744