Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004673.1 Length=2739 Score E Sequences producing significant alignments: (Bits) Value seq13 123 4e-25 seq11 122 2e-24 seq16 114 2e-22 >seq13 Length=197258317 Score = 123 bits (136), Expect = 4e-25 Identities = 212/303 (70%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 1675 CCAGGATTGCAGAGGAAGATTGTTGGTATTCCACCTTTAATTTGAACTGGCTTCCCGTAC 1734 || || ||||| || | |||||||||||| || ||||| | || |||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1735 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTGAGGAAG 1794 || ||| || ||||| | ||| || || || |||||||| ||||||||| | | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1795 TGCGGATCTACGCCATCAATGACGTTATACCAAGCGTCGTTACTGTACAC-CTTTGGGCT 1853 || || || | |||| |||| ||| || | ||||||| | | || ||| || Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1854 T-AGATCTAGATGCCCACATAAATAATTATGTGGGCCTAAAGACCTAGCCCACATTGTCT 1912 | || || | ||| ||||||| || |||||| || ||||| || ||||||||||| | Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1913 TCCCAGTACGACTATCACCCTCAATTACTAT--ACTTTGAGGTCTCAGGGGCCGCGCAGC 1970 | || || | ||||| || || | ||| ||||| ||||||| ||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGCAGC 89851498 Query 1971 GGC 1973 ||| Sbjct 89851499 GGC 89851501 >seq11 Length=168460249 Score = 122 bits (134), Expect = 2e-24 Identities = 239/349 (68%), Gaps = 7/349 (2%) Strand=Plus/Minus Query 1675 CCAGGATTGCAGAGGAAGATTGTTGGTATTCCACCTTTAATTTGAACTGGCTTCCCGTAC 1734 || || ||||| || | |||||||||||| || ||||| | || |||||| ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1735 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTGAGGAAG 1794 || || || ||||| | | ||| || || || |||||||| ||||| ||| | | Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1795 TGCGGATCTACGCCATCAATGACGTTATACCAAGCGTCGTTACTGTACACCTTTGGGCTT 1854 || || || | |||| |||| ||| || ||||| ||| | | || ||| | | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1855 AGATCTAGATGCCCACATAAATAATTATGTGGGCCTAAAGACCTAGCCCACATTGTCTTC 1914 | || | ||| ||||||| || |||||| || ||||| || ||||||||||| || Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1915 CCAGTACGACTATCACCCTCAATTACTAT--ACTTTGAGGTCTCAGGGGCCGCGCAGCGG 1972 | || | || ||| | || | | | ||||| ||||||| ||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGCGG 165527306 Query 1973 C--GTCGACAACATTCTCAGAC-ACCCATTCTTCAAGTTCTTCTGGAAC 2018 | || ||| | | | | | | ||||||||| || |||||||| || Sbjct 165527305 CTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTAC 165527257 >seq16 Length=188620566 Score = 114 bits (126), Expect = 2e-22 Identities = 189/271 (70%), Gaps = 4/271 (1%) Strand=Plus/Minus Query 1709 CTTTAATTTGAACTGGCTTCCCGTACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCA 1768 |||| || ||||| || || | |||||| || | ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1769 TGAACTCTTTAAAGTGCTTGAGGAAGTGCGGATCTACGCCATCAATGACGTTATA--CCA 1826 || || || |||| || | | || || | ||| |||||| |||||||| ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1827 AGCGTCGTTACTGTACACCTTTGGGCTTAGATCTAGATGCCCACATAAATAATTATGTGG 1886 | |||||| | | ||| | || | | |||| || |||| ||||||||||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1887 GCCTAAAGACCTAGCCCACATTGTCTTCCCAGTACGACTATCACCCTCAATTACTATACT 1946 || || || || |||||||||||||| || || | |||||| ||||||| ||| Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1947 TTGAGGTCTCAGGGGCCGCGCAGCGGCGTCG 1977 |||||||||| || || | |||| |||| Sbjct 2249095 CTGAGGTCTCAATGGGCGTGAAGCGCTGTCG 2249065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8655859469840