Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004674.1 Length=2799 Score E Sequences producing significant alignments: (Bits) Value seq16 95.1 2e-16 seq13 95.1 2e-16 seq11 93.3 7e-16 >seq16 Length=188620566 Score = 95.1 bits (104), Expect = 2e-16 Identities = 187/269 (70%), Gaps = 12/269 (4%) Strand=Plus/Minus Query 1760 CTTTAATTTGAATTGGCTTCCCGTATTTTGTA--TTGCTTTGCCAGTCCCTTTGGGCCCC 1817 |||| || |||| || || | ||| || | | |||||| ||||||| ||||| || || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTT-GCACTTTGCTT-GCCAGTCTCTTTGTGCACC 2249276 Query 1818 CATGAATTCTTTGAAGTGTTTGAGGTAGTGGGGGTCGACGTCATCAATGACGTTGTA--C 1875 | ||||| || ||||||| | | || |||| |||| |||||| ||||| || | Sbjct 2249275 AAGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTC 2249216 Query 1876 CATGCGTCGTTTGAATATACCTTGGGAGACAGATCCAGGTGTCCACAAAGATAATTATGG 1935 || | ||||| || | ||| | ||| || || | | |||| | ||||||||| Sbjct 2249215 CA--CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGT 2249158 Query 1936 GGTCCCAGTGAACGAGCCCACATTGTTTTGCCGGTTCGGCTATCACCTTCTAGAACAAT- 1994 ||||| ||| | ||||||||||| || ||||||| ||||||||| | | || Sbjct 2249157 CTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATT 2249098 Query 1995 -ACTGATCGGTCTCCATGGCCGCGCAGCG 2022 ||||| |||||| |||| || | |||| Sbjct 2249097 GACTGA--GGTCTCAATGGGCGTGAAGCG 2249071 >seq13 Length=197258317 Score = 95.1 bits (104), Expect = 2e-16 Identities = 207/305 (68%), Gaps = 10/305 (3%) Strand=Plus/Plus Query 1725 TCCTGGATTGCAGAGGAAGATAGTGGGAATGCCGCCTTTAATTTGAATTGGCTTCCCGTA 1784 |||||| ||||| || | ||| || || ||||| ||||| | || ||||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1785 TTTTGTATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTGAAGTGTTTGAGGTA 1844 ||| || ||||| | ||| || || || || ||||| |||| |||| ||| Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1845 --GTGGGGGTCGACGTCATCAATGACGTTGTACCATGCGTCGTTTGAATATACCTTGGGA 1902 |||| ||| | |||||| |||| |||||| |||||||||| | || || Sbjct 89851320 TTGTGGTGGT--ATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCT 89851377 Query 1903 GACAGA--TCCAGGTGTCCACAAAGATAATTATGGGGTCCCAGTGAACGAGCCCACATTG 1960 || |||| || ||||| | || ||||| ||||| || | |||||||||| Sbjct 89851378 TCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTG 89851437 Query 1961 TTTTGCCGGTTCGGCTATCACCTTCTAGAACAAT--ACTGATCGGTCTCCATGGCCGCGC 2018 |||| || || | | ||||| ||||| | || ||| | |||||| |||||||| Sbjct 89851438 TTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCGCGC 89851495 Query 2019 AGCGG 2023 ||||| Sbjct 89851496 AGCGG 89851500 >seq11 Length=168460249 Score = 93.3 bits (102), Expect = 7e-16 Identities = 207/305 (68%), Gaps = 12/305 (4%) Strand=Plus/Minus Query 1725 TCCTGGATTGCAGAGGAAGATAGTGGGAATGCCGCCTTTAATTTGAATTGGCTTCCCGTA 1784 |||||| ||||| || | ||| || || ||||| ||||| | || ||||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1785 TTTT--GTATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTGAAGTGTTTGAGG 1842 ||| ||| || |||| | | ||| || || || || ||||| |||| ||| | Sbjct 165527544 TTTGCAGTAAGACT--GCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAG 165527487 Query 1843 TA--GTGGGGGTCGACGTCATCAATGACGTTGTACCATGCGTCGTTTGAATATACCTTGG 1900 || |||| ||| | |||||| |||| |||||| |||| |||||| | || || Sbjct 165527486 TATTGTGGTGGT--ATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTT 165527429 Query 1901 GAGACAGATCCAGGTGTCCACAAAGATAATTATGGGGTCCCAGTGAACGAGCCCACATTG 1960 | |||| || ||||| | || ||||| ||||| || | |||||||||| Sbjct 165527428 TGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTG 165527369 Query 1961 TTTTGCCGGTTCGGCTATCACCTTCTAGAACAAT--ACTGATCGGTCTCCATGGCCGCGC 2018 |||||| || | | || ||||| || | | ||| | |||||| |||||||| Sbjct 165527368 TTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCGGCCGCGC 165527311 Query 2019 AGCGG 2023 ||||| Sbjct 165527310 AGCGG 165527306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8844652181280