Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004675.1 Length=2766 Score E Sequences producing significant alignments: (Bits) Value seq16 138 2e-29 seq13 107 3e-20 seq11 96.9 6e-17 >seq16 Length=188620566 Score = 138 bits (152), Expect = 2e-29 Identities = 161/213 (76%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 1730 CTTTAATTTGAATTGGTTTCCCGTACTT-CGTGTTGCTTTGCCAGTCCCTTTGGGCCCCA 1788 |||| || |||| ||||| | |||||| | |||||| ||||||| ||||| || ||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTT-GCCAGTCTCTTTGTGCACCA 2249275 Query 1789 AAGAATTCCTTCCAGTGCTTTAGGTAATGCGGATCTACGTCATCAATGACGTTATA--CC 1846 | |||||||||||||| |||| | || || | |||| |||||| |||||||| || Sbjct 2249274 AGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCC 2249215 Query 1847 AAGCGTCATTAGAATATACCTTTGGACTTAAGTCTAAATGACCACATAAGTAATTATGTT 1906 | | || ||||| | ||| | ||| | |||||||||| ||||| ||| ||||||||| Sbjct 2249214 A--CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTC 2249157 Query 1907 GCCCTAATGATCTAGCCCAAATAGTTTTGCCGG 1939 || |||||||| ||||| || || || |||| Sbjct 2249156 TTCCCAATGATCTTGCCCACATTGTCTTTCCGG 2249124 >seq13 Length=197258317 Score = 107 bits (118), Expect = 3e-20 Identities = 206/301 (68%), Gaps = 2/301 (1%) Strand=Plus/Plus Query 1696 CCTGGATTGCAGAGGAAGATAGTGGGAATGCCGCCTTTAATTTGAATTGGTTTCCCGTAC 1755 ||||| ||||| || | ||| || || ||||| ||||| | || |||| || |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1756 TTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCAAAGAATTCCTTCCAGTGCTTTAGGTAA 1815 || ||| ||||| | ||| || |||| || || ||||||||||| | ||| Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1816 TGCGGATCTACGTCATCAATGACGTTATACCAAGCGTCATTAGAATATAC-CTTTGGACT 1874 || || || |||||| |||| ||| || | |||| || || | || ||| || Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1875 T-AAGTCTAAATGACCACATAAGTAATTATGTTGCCCTAATGATCTAGCCCAAATAGTTT 1933 | | ||| | ||||||||||| ||| ||||||| || || ||||| ||||| || |||| Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1934 TGCCGGAACGACTATCGCCCTCTATTACAATACTATTGGGTCTCCAAGGCCGCGCAGCGG 1993 | || | | ||| | ||||| | || || |||||| ||||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGCGG 89851500 Query 1994 C 1994 | Sbjct 89851501 C 89851501 >seq11 Length=168460249 Score = 96.9 bits (106), Expect = 6e-17 Identities = 166/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1696 CCTGGATTGCAGAGGAAGATAGTGGGAATGCCGCCTTTAATTTGAATTGGTTTCCCGTAC 1755 ||||| ||||| || | ||| || || ||||| ||||| | || |||| || ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1756 TTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCAAAGAATTCCTTCCAGTGCTTTAGGTAA 1815 || || ||||| | | ||| || |||| || || ||||||||| | | ||| Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1816 TGCGGATCTACGTCATCAATGACGTTATACCAAGCGTCATTAGAATATACCTTTGGACTT 1875 || || || |||||| |||| ||| || ||||| || || | || ||| | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1876 AAGTCTAAATGACCACATAAGTAATTATGTTGCCCTAATGATCTAGCCCAAATAGTTTTG 1935 ||| | ||||||||||| ||| |||||| || || ||||| ||||| || |||||| Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1936 C 1936 | Sbjct 165527363 C 165527363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8739053946120