Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004732.1 Length=2662 Score E Sequences producing significant alignments: (Bits) Value seq16 145 1e-31 seq13 107 3e-20 seq11 104 4e-19 >seq16 Length=188620566 Score = 145 bits (160), Expect = 1e-31 Identities = 176/240 (73%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 1604 CTTTAATTTGAACCGGCTTTCCATATTTACAGTTGGACTGCCAGTCCCTTTGGGCCCCAA 1663 |||| || |||||||| |||| || || || || | |||||||| ||||| || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1664 TCAATTCTTTCCAGTGCTTTAGCTTTAAATAATGCGGAGCGACGTCATCAATGACGTTAT 1723 ||||| |||||||| |||| || | || || |||| |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTA------AACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1724 ACTTGACGTCATTTGAGAAAACCCTAGAATTGAAATCAAGGTGTCCACTCAAATAGTTAT 1783 | | || || || ||||||||| ||| ||| || || | | ||||| ||||| |||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1784 GTGGGCCTAAAGACCGAGCCCACATTGTTTTGCCCGTTCGAGAATCACCCTCAATTATTA 1843 || || || || | ||||||||||| || || |||| |||||||| |||||||||| Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 >seq13 Length=197258317 Score = 107 bits (118), Expect = 3e-20 Identities = 191/278 (69%), Gaps = 8/278 (3%) Strand=Plus/Plus Query 1568 CTCCGGGATTGCAAAGCACTATTGATGGGATTCCACCTTTAATTTGAACCGGCTTTCCAT 1627 |||| || ||||| || | |||| ||| || || ||||| | || ||||| | | Sbjct 89851199 CTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGT 89851258 Query 1628 ATTTACAGTTGGACTGCCAGTCCCTTTGGGCCCCAATCAATTCTTTCCAGTGCTTTAGCT 1687 |||| ||||| |||||||| | ||| || ||||| || |||||||||| ||| Sbjct 89851259 ATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGT------GCT 89851312 Query 1688 TTAAATAATGCGGAGCGACGTCATCAATGACGTTATACTTGACGTCATTTGAGAAAAC-- 1745 | || || || || | | |||||| |||| ||| || | ||||| |||||||| || Sbjct 89851313 TGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTT 89851372 Query 1746 CCTAGAATTGAAATCAAGGTGTCCACTCAAATAGTTATGTGGGCCTAAAGACCGAGCCCA 1805 | |||| || | || |||| | ||||||||| || ||||| | ||||| Sbjct 89851373 TTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCA 89851432 Query 1806 CATTGTTTTGCCCGTTCGAGAATCACCCTCAATTATTA 1843 ||||||||| || || | ||||||| || || |||| Sbjct 89851433 CATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTA 89851470 >seq11 Length=168460249 Score = 104 bits (114), Expect = 4e-19 Identities = 184/269 (68%), Gaps = 6/269 (2%) Strand=Plus/Minus Query 1564 CCCTCTCCGGGATTGCAAAGCACTATTGATGGGATTCCACCTTTAATTTGAACCGGCTTT 1623 ||| |||| || ||||| |||| |||| ||| || || ||||| | || ||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1624 CCATATTTACAGTTGGACTGCCAGTCCCTTTGGGCCCCAATCAATTCTTTCCAGTGCTTT 1683 || ||||| |||| |||||||| | | ||| || ||||| || |||||||||| Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGT----- 165527495 Query 1684 AGCTTTAAATAATGCGGAGCGACGTCATCAATGACGTTATACTTGACGTCATTTGAGAAA 1743 || | || || || || | | |||||| |||| ||| || | ||| |||||||| Sbjct 165527494 -GCATGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1744 ACCCTAGAATTGAAATCAAGGTGTCCACTCAAATAGTTATGTGGGCCTAAAGACCGAGCC 1803 || | ||| || | || |||| | ||||||||| || ||||| | ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1804 CACATTGTTTTGCCCGTTCGAGAATCACC 1832 ||||||||||||| || | |||| ||| Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACC 165527347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8409463470144