Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004824.1 Length=2742 Score E Sequences producing significant alignments: (Bits) Value seq13 100 5e-18 seq11 91.5 3e-15 seq16 84.2 4e-13 >seq13 Length=197258317 Score = 100 bits (110), Expect = 5e-18 Identities = 202/296 (68%), Gaps = 4/296 (1%) Strand=Plus/Plus Query 1680 TTGCAGAGGAAGATAGTGGGTATTCCACCTTTAATCATGACT-GGCTTTCCGTATTTCGT 1738 ||||| || | ||| || ||||| || ||||| | || |||| ||||| ||||||| Sbjct 89851207 TTGCATAGTATGATTGTTGGTATGCCTCCTTTGA-CAAGACTTGGCTTGTCGTATTTGCA 89851265 Query 1739 GTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAATGCTTTAGGTAGTGCGG 1798 ||| ||||| | | ||| || || || || ||||| | ||||| | ||| || || Sbjct 89851266 GTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTATTGTGG 89851325 Query 1799 GTCGACGTCATCAATGACGTTGTACCAAGCTTCATTATTGTACACTCT--CGGGCTCAGA 1856 | |||||| |||| |||||| | | || || | | ||| | | | || Sbjct 89851326 TGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCTTGAGG 89851385 Query 1857 TCCAGATGACCGCATAGATAATTGTGTGGGCCTAAAGACCTGGCCCACATTGTCTTGCCC 1916 |||| |||||| |||| || || ||| || ||||| || ||||||||||| || || Sbjct 89851386 TCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTTTACCT 89851445 Query 1917 GTACGACTATCACCCTCAATGACAATACTCTTGGGTCTCCACGGCCGCGCAGCGGC 1972 || | ||||| || |||| || ||| |||||| ||||||||||||||| Sbjct 89851446 GTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGCGGC 89851501 >seq11 Length=168460249 Score = 91.5 bits (100), Expect = 3e-15 Identities = 198/294 (67%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 1680 TTGCAGAGGAAGATAGTGGGTATTCCACCTTTAATCATGACT-GGCTTTCCGTATTTCGT 1738 ||||| || | ||| || ||||| || ||||| | | |||| ||||| |||||||| Sbjct 165527597 TTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAA-GACTTGGCTTGCCGTATTTGCA 165527539 Query 1739 GTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAATGCTTTAGGTAGTGCGG 1798 || ||||| | || ||| || || || || ||||| | ||| | | ||| || || Sbjct 165527538 GTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTATTGTGG 165527479 Query 1799 GTCGACGTCATCAATGACGTTGTACCAAGCTTCATTATTGTACACTCTCGGGCTCAGATC 1858 | |||||| |||| |||||| ||| | || | | ||| | | | | || Sbjct 165527478 TGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTGTGGTC 165527419 Query 1859 CAGATGACCGCATAGATAATTGTGTGGGCCTAAAGACCTGGCCCACATTGTCTTGCCCGT 1918 || |||||| |||| || || ||| || ||||| || ||||||||||| |||| || Sbjct 165527418 CATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTGCTTGT 165527359 Query 1919 ACGACTATCACCCTCAATGACAATACTCTTGGGTCTCCACGGCCGCGCAGCGGC 1972 | || ||| | |||| | ||| |||||| ||||||||||||||| Sbjct 165527358 CCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCGCAGCGGC 165527305 >seq16 Length=188620566 Score = 84.2 bits (92), Expect = 4e-13 Identities = 181/266 (68%), Gaps = 6/266 (2%) Strand=Plus/Minus Query 1708 CTTTAATCATGACTGGCTTTCCGTATTT-CGTGTTGCTTTGCCAGTCTCTTTGGGCCCCC 1766 |||| ||| || || |||| ||| || | |||||| ||||||||||||| || || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTT-GCCAGTCTCTTTGTGCACCA 2249275 Query 1767 ATGAATTCTTTAAAATGCTTTAGGTAGTGCGGGTCGACGTCATCAATGACGTTGTA--CC 1824 | ||||| || | || |||| | || |||| |||| |||||| ||||| || || Sbjct 2249274 AGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCC 2249215 Query 1825 AAGCTTCATTATTGTACACTCTCGGGCTCAGATCCAGATGACCGCATAGATAATTGTGTG 1884 | | || ||| | | || | || ||| || | || ||| | || |||||| ||| Sbjct 2249214 A--CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTC 2249157 Query 1885 GGCCTAAAGACCTGGCCCACATTGTCTTGCCCGTACGACTATCACCCTCAATGACAATAC 1944 || || || || |||||||||||||| || || | |||||| ||||| | || Sbjct 2249156 TTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTG 2249097 Query 1945 TCTTGGGTCTCCACGGCCGCGCAGCG 1970 || |||||| | || || | |||| Sbjct 2249096 ACTGAGGTCTCAATGGGCGTGAAGCG 2249071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8665459313984