Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_005031.1 Length=2752 Score E Sequences producing significant alignments: (Bits) Value seq16 102 1e-18 seq11 82.4 1e-12 >seq16 Length=188620566 Score = 102 bits (112), Expect = 1e-18 Identities = 185/267 (69%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 1725 CTTTAATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCA 1784 |||| || |||| ||||| | ||||||| || ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1785 TGAATTCTTTAAAGTGCTTTAAGTAGTGGGGGTCGACGTCATCAATGACGTTGTA--CCA 1842 ||||| || |||| ||||| | || |||| |||| |||||| ||||| || ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1843 GGCATCATTGCTGTATACCTTTGGGCTCAGATCTAAATGACCGCACAAATAATTATGTGG 1902 |||| || | | ||| | || ||| ||||||| ||| | |||||||||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1903 GCCTAAAGAACGAGCCCACATCGTCTTCCCTGTACGGCTCTCACCCTCTATGACAAT--A 1960 || || || | |||||||| ||||| || || | ||||| || || | || | Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1961 CTAACAGGTCTCCATGGCCGCGCAGCG 1987 || ||||||| |||| || | |||| Sbjct 2249095 CT--GAGGTCTCAATGGGCGTGAAGCG 2249071 >seq11 Length=168460249 Score = 82.4 bits (90), Expect = 1e-12 Identities = 205/306 (67%), Gaps = 14/306 (5%) Strand=Plus/Minus Query 1691 CCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCGTAC 1750 ||||| ||||| || | ||| ||||| || || ||||| | || |||| || ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1751 TTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAAGTA- 1809 ||| || ||||| | | ||| || || || || ||||| ||||| | ||||| Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1810 -GTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCATCATTGCT---GTATACCTTTG 1865 |||| ||| | |||||| |||| |||||| | || | ||| | | | || ||| Sbjct 165527483 TGTGGTGGT--ATGTCATCGATGATGTTGTA---GTCAGCGTTGTTTGAGAAGACTTTTT 165527429 Query 1866 GGCTCAGATCTAAATGACCGCACAAATAATTATGTGGGCCTAAAGAACGAGCCCACATCG 1925 | | | || | |||||| || | || |||||| || ||||| | |||||||| | Sbjct 165527428 TGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTG 165527369 Query 1926 TCTTCCCTGTACGGCTCTCACCCTCTATGACAATACTAACA--GGTCTCCATGGCCGCGC 1983 | || | ||| | | | ||| | ||||| | | || |||||| |||||||| Sbjct 165527368 TTTTGCTTGTCCTGGAATTACCTTTTATGATTGT--TGACTTTGGTCTCATCGGCCGCGC 165527311 Query 1984 AGCGGC 1989 |||||| Sbjct 165527310 AGCGGC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8697458794464