Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_005032.1 Length=2755 Score E Sequences producing significant alignments: (Bits) Value seq16 96.9 6e-17 seq11 96.9 6e-17 seq13 93.3 7e-16 >seq16 Length=188620566 Score = 96.9 bits (106), Expect = 6e-17 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 1738 CTTTAATTTGAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCA 1797 |||| || |||| ||||| | |||||| || ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1798 TAAACTCTTTAAAATGCTTTAGATAGTGGGGGTCGACGTCATCAATGACGTTGTA--CCA 1855 || || || | || |||| | | || |||| |||| |||||| ||||| || ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1856 GGCATCATTACTGTACACCTTTGGACTAAGGTCCAGATGTCCACACAAATAATTATGTGG 1915 |||| ||| | | ||| | ||| | | ||| | || |||| |||||||||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1916 ACCCATAGACCTAGCCCACATCGTCTTCCCCGTCCTGCTATCTCCTTCTAT 1966 |||| || || |||||||| ||||| || || || ||| ||||| || Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAAT 2249105 >seq11 Length=168460249 Score = 96.9 bits (106), Expect = 6e-17 Identities = 206/304 (68%), Gaps = 8/304 (3%) Strand=Plus/Minus Query 1703 TCCTGGATTGCATAGGAAGATTGTTGGGATCCCACCTTTAATTTGAATTGGTTTCCCGTA 1762 |||||| |||||||| | ||||||||| || || ||||| | || |||| || ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1763 CTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATAAACTCTTTAAAATGCTTTA--GA 1820 || || ||||| | | ||| || || ||||||||||| | ||| | | | Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1821 TAGTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCATCATTACTGTACACCTTTGGA 1880 | |||| ||| | |||||| |||| |||||| || | || | | || ||| Sbjct 165527484 TTGTGGTGGT--ATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTG 165527427 Query 1881 CTAAGGTCCAGATGTCCACACAAATAATTATGTGGACCCATAGACCTAGCCCACATCGTC 1940 | |||||| ||| ||||| | || |||||| |||| ||| || |||||||| || Sbjct 165527426 TTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTT 165527367 Query 1941 TTCCCCGTCCTGCTATCTCCTTCTATGACAATACTCATGGGTCTCCCATTG--CGCGCAG 1998 || | |||||| || |||| ||||| | | | ||||| ||| | ||||||| Sbjct 165527366 TTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCT--CATCGGCCGCGCAG 165527309 Query 1999 CGGC 2002 |||| Sbjct 165527308 CGGC 165527305 >seq13 Length=197258317 Score = 93.3 bits (102), Expect = 7e-16 Identities = 165/238 (69%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 2249 TCTAGCAGATCTTCCATCGATCTGAAACTCACCCCATTCGAGGGTGTCTCCGTCCTTATC 2308 ||| | |||| |||||| |||||||| ||||| |||| || ||||| || | Sbjct 172134321 TCTGGTAGATGTTCCATGTTTCTGAAACATCCCCCAGTCGATTACATCACCGTCTTTCTG 172134380 Query 2309 AATATATGATTTGACGTCGGAGCTTGATTTAGCTCCCTGTATGTTTGGATGGTAATGTGC 2368 || ||| | |||| | | || |||||||| |||||||| |||||| || | | Sbjct 172134381 CATGTATCTTCTGACAAAGAAACTGGATTTAGCAGACTGTATGTATGGATGACAAATTTC 172134440 Query 2369 TGACCTTGTTGGG-GATACCAGATCGAAGAATCTCTTATTCGTGCATCTGTATTTCCCTT 2427 ||| | ||||| ||| || || |||||||| ||| ||| || ||||| || Sbjct 172134441 AGACGTATTTGGGTGATTG-AGGTCAAAGAATCTTGGATTTTGACATTTGAATTTCTTTT 172134499 Query 2428 CGAACTGGATGAGCACATGGAGATGAGGGCTCCCATCTTCGTGCAGTTCTCTGCAGAT 2485 | | ||| || | ||||| |||||||| | | ||||||||||||||| ||||||| Sbjct 172134500 CCATCTGCATCAAAACATGAAGATGAGGCTTGTCGTCTTCGTGCAGTTCTATGCAGAT 172134557 Score = 82.4 bits (90), Expect = 1e-12 Identities = 157/228 (69%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 2261 TCCATCGATCTGAAACTCACCCCATTCGAGGGTGTCTCCGTCCTTATCAATATATGATTT 2320 ||||| |||||||| ||||| |||| |||| ||||| || | |||||| | | Sbjct 89851763 TCCATGTTTCTGAAACGTTCCCCAGTCGATTATGTCACCGTCTTTTTGCATATATCTTCT 89851822 Query 2321 GACGTCGGAGCTTGATTTAGCTCCCTGTATGTTTGGATGGTAATGTGCTGACCTTGTTGG 2380 |||| | | || |||||||| |||||| |||||||| || | | ||| | |||| Sbjct 89851823 GACGAAGAAACTGGATTTAGCAGACTGTATATTTGGATGACAAACTTCAGACATATTTGG 89851882 Query 2381 G-GATACCAGATCGAAGAATCTCTTATTCGTGCATCTGTATTTCCCTT--CGAACTGGAT 2437 | ||| | || |||||||| ||| ||| | |||| || | | ||| || Sbjct 89851883 GTGATTGATG-TCAAAGAATCTTGGATTTTGACATTTCAATTTTTTTTTTCAATCTGCAT 89851941 Query 2438 GAGCACATGGAGATGAGGGCTCCCATCTTCGTGCAGTTCTCTGCAGAT 2485 | ||||| |||||||| | | |||||||||| |||||||||||| Sbjct 89851942 CAAAACATGTAGATGAGGTTTACTGTCTTCGTGCAATTCTCTGCAGAT 89851989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8707058638608