Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_005319.1 Length=2746 Score E Sequences producing significant alignments: (Bits) Value seq16 120 5e-24 seq13 100 5e-18 seq11 91.5 3e-15 >seq16 Length=188620566 Score = 120 bits (132), Expect = 5e-24 Identities = 189/266 (71%), Gaps = 6/266 (2%) Strand=Plus/Minus Query 1728 CTTTAATTTGAACTGGCTTTCCGTATTT-CGTGTTGCTTTGCCAGTCCCTTTGGGCCCCC 1786 |||| || ||||| || |||| ||| || | |||||| ||||||| ||||| || || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTT-GCCAGTCTCTTTGTGCACCA 2249275 Query 1787 ATGAATTCCTTGAAGTGCTTTAGGTAGTGGGGATCGACGTCATCAATCACGTTGTA--CC 1844 | |||||||| |||| |||| | || || | |||| |||||| ||||| || || Sbjct 2249274 AGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCC 2249215 Query 1845 AAGCATCATTACTGTAGACCTTAGGACTAAGGTCTAAGTGACCACACAGGTAATTATGTG 1904 | |||| ||| | | ||| ||||| | | |||||| | ||||| | ||||||||| Sbjct 2249214 A--CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTC 2249157 Query 1905 GACCCAAAGACCTAGCCCACATCGTCTTCCCCGTACGACTATCACCCTCTATGACAATAG 1964 ||||| || || |||||||| ||||| || || | |||||| || || | || | Sbjct 2249156 TTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTG 2249097 Query 1965 TTTTGGGTCTCAATGGCCGCGCAGCG 1990 | ||||||||||| || | |||| Sbjct 2249096 ACTGAGGTCTCAATGGGCGTGAAGCG 2249071 >seq13 Length=197258317 Score = 100 bits (110), Expect = 5e-18 Identities = 204/302 (68%), Gaps = 2/302 (1%) Strand=Plus/Plus Query 1693 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1752 |||||| ||||| || | ||| || || || || ||||| | || |||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1753 TTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTGAAGTGCTTTAGGTA 1812 ||| ||| ||||| | ||| || || || || || || ||||||| | ||| Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1813 GTGGGGATCGACGTCATCAATCACGTTGTACCAAGCATCATTACTGTAGACCTTAGGAC- 1871 || || | |||||| || | |||||| | | || || | |||| || Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1872 -TAAGGTCTAAGTGACCACACAGGTAATTATGTGGACCCAAAGACCTAGCCCACATCGTC 1930 | ||||| | |||||||| | ||| |||||| |||||||| || |||||||| || Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1931 TTCCCCGTACGACTATCACCCTCTATGACAATAGTTTTGGGTCTCAATGGCCGCGCAGCG 1990 || || || | ||||| ||||||| || | || ||||||| |||||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGCG 89851499 Query 1991 GC 1992 || Sbjct 89851500 GC 89851501 >seq11 Length=168460249 Score = 91.5 bits (100), Expect = 3e-15 Identities = 200/300 (67%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 1693 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1752 |||||| ||||| || | ||| || || || || ||||| | || |||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1753 TTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTGAAGTGCTTTAGGTA 1812 ||| || ||||| | | ||| || || || || || || ||||| | | ||| Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1813 GTGGGGATCGACGTCATCAATCACGTTGTACCAAGCATCATTACTGTAGACCTTAGGACT 1872 || || | |||||| || | |||||| ||| | || | |||| || | Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425 Query 1873 AAGGTCTAAGTGACCACACAGGTAATTATGTGGACCCAAAGACCTAGCCCACATCGTCTT 1932 |||| | |||||||| | ||| |||||| |||||||| || |||||||| || || Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Query 1933 CCCCGTACGACTATCACCCTCTATGACAATAGTTTTGGGTCTCAATGGCCGCGCAGCGGC 1992 | || | || ||| | ||||| | | || ||||||| |||||||||||||| Sbjct 165527364 GCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCGCAGCGGC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8678259106176