Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_005320.1 Length=2738 Score E Sequences producing significant alignments: (Bits) Value seq16 111 3e-21 >seq16 Length=188620566 Score = 111 bits (122), Expect = 3e-21 Identities = 187/267 (70%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 1719 CTTTAATTTGAACAGGCTTTCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCA 1778 |||| || ||||| || |||| |||||| || ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1779 TGAATTCTTTAAAATGCTTTAGGTAGTGCGGATCTACGTCATCAATGACGTTGTA--CCA 1836 ||||| || | || |||| | || || | |||| |||||| ||||| || ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1837 GGCGTCATTATTGTATACCTTTGGACTCAAATCAAGATGACCACACAAATAATTATGGCG 1896 | || ||| | | ||| | ||| |||| || | || ||||| ||||||||||| | Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1897 TCCTAATGACCTGGCCCACATCGTCTTCCCCGTCCGACTATCGCCTTCGATAACTAT--A 1954 ||| ||||| || |||||||| ||||| || || | ||| ||||| || | ||| | Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1955 CTTATTGGTCGTAATGGCCGCGCAGCG 1981 || | |||| ||||| || | |||| Sbjct 2249095 CTGA--GGTCTCAATGGGCGTGAAGCG 2249071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8652659521792