Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_005330.1 Length=2675 Score E Sequences producing significant alignments: (Bits) Value seq16 131 3e-27 seq13 122 1e-24 seq11 118 2e-23 >seq16 Length=188620566 Score = 131 bits (144), Expect = 3e-27 Identities = 223/322 (69%), Gaps = 10/322 (3%) Strand=Plus/Minus Query 1674 GGCTTTCCGTACTTGCAGTTTGTCTGCCATTTTTGTTGGGCCCCTACTAGCTCTTTCCAG 1733 || |||| ||||||||| |||| ||||| | | ||| || || | || || |||||| Sbjct 2249319 GGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAAGTAATTCCTTCCAG 2249260 Query 1734 TGTTTCAACTTTAGGTAATGCGGAGCGACGTCATCAATGACGTTATACTCCACTTGATCA 1793 ||| |||| | || || |||| |||||| |||||||| ||||| | | | Sbjct 2249259 TGT------TTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCACATCGTTA 2249206 Query 1794 GAATATACCTTTGAGTTGAAATCCAGATGGCCACTGAAGTAATTATGTGGGCCTAATGCT 1853 || | ||| | | || || || | || ||||| || ||||||||| || |||| | Sbjct 2249205 GAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCTTCCCAATGAT 2249146 Query 1854 CTAGCCCACATCGTCTTGCCAGTTCGAGAACCACCTTCAACAATTA--AACTTATAGGCC 1911 || |||||||| ||||| || |||| ||| ||||||||| |||| ||| ||| | Sbjct 2249145 CTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGACT--GAGGTC 2249088 Query 1912 TCAATGGCCGCGCAGCGGAACCCCTCCCAAAATAATCATCGGCCCACTCTTGCATCTCGT 1971 ||||||| || | |||| | |||||||||||| ||||| | |||||| | | Sbjct 2249087 TCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCATTTTTGCATAACTT 2249028 Query 1972 CTGGCACGTCAGTGAATGAGGA 1993 ||| |||| ||||| || || Sbjct 2249027 GTGGTACGTTCGTGAAAGAAGA 2249006 >seq13 Length=197258317 Score = 122 bits (134), Expect = 1e-24 Identities = 251/371 (68%), Gaps = 18/371 (5%) Strand=Plus/Plus Query 1624 CTCCAGGATTGCATAGCACGATTGAAGGGACCCCACCTTCAATCAAACGAGGCTTTCCGT 1683 |||| || |||||||| | ||||| || | || |||| | | || ||||| ||| Sbjct 89851199 CTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGT 89851258 Query 1684 ACTTGCAGTTTGTCTGCCATTTTTGTTGGGCCCCTACTAGCTCTTTCCAGTGTTTCAACT 1743 | |||||||| | |||||| |||||||| || || | | |||||||||||| || Sbjct 89851259 ATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTG------CT 89851312 Query 1744 TTAGGTAATGCGGAGCGACGTCATCAATGACGTTATACTCCAC-----TTGATCAGAATA 1798 | | ||| || || | | |||||| |||| ||| || || || |||| ||| | Sbjct 89851313 TGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTT 89851372 Query 1799 TACCTTTGAGTTGAAATCCAGATGGCCACTGAAGTAATTATGTGGGCCTAATGCTCTAGC 1858 | ||| |||| |||| ||| |||| | ||| |||||| || || | ||| || Sbjct 89851373 TTTCTT---CTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGC 89851429 Query 1859 CCACATCGTCTTGCCAGTTCGAGAACCACCTTCAACAATTA--AACTTATAGGCCTCAAT 1916 |||||| || || || || | ||| ||| ||| | |||| ||| | || |||| Sbjct 89851430 CCACATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATC 89851487 Query 1917 GGCCGCGCAGCGGAACCCCTCCCAAAATAATCATCGGCCCACTCTTGCATCTCGTCTGGC 1976 ||||||||||||| ||||| || ||| ||||| | ||||| || ||||| Sbjct 89851488 GGCCGCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGT 89851547 Query 1977 ACGTCAGTGAA 1987 || | |||||| Sbjct 89851548 ACATTAGTGAA 89851558 >seq11 Length=168460249 Score = 118 bits (130), Expect = 2e-23 Identities = 249/370 (67%), Gaps = 10/370 (3%) Strand=Plus/Minus Query 1620 CCCTCTCCAGGATTGCATAGCACGATTGAAGGGACCCCACCTTCAATCAAACGAGGCTTT 1679 ||| |||| || |||||||||| ||||| || | || |||| | | || ||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1680 CCGTACTTGCAGTTTGTCTGCCATTTTTGTTGGGCCCCTACTAGCTCTTTCCAGTGTTTC 1739 ||||| ||||||| | |||||| ||| |||| || || | | |||||||||||| Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTG---- 165527494 Query 1740 AACTTTAGGTAATGCGGAGCGACGTCATCAATGACGTTATACTCCACTTGATCAGAATAT 1799 | | | ||| || || | | |||||| |||| ||| || || | | | || | Sbjct 165527493 --CATGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1800 ACCTTTGAGTTGAAATCCAGATGGCCACTGAAGTAATTATGTGGGCCTAATGCTCTAGCC 1859 || ||| |||| |||| ||| |||| | ||| |||||| || || | ||| ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1860 CACATCGTCTTGCCAGTTCGAGAACCACCTTCAACAAT--TAAACTTATAGGCCTCAATG 1917 ||||| || |||| || | ||| ||||| | || | ||| | || |||| | Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCG 165527318 Query 1918 GCCGCGCAGCGGAACCCCTCCCAAAATAATCATCGGCCCACTCTTGCATCTCGTCTGGCA 1977 |||||||||||| ||||| || ||| ||||| ||||||| || ||||| | Sbjct 165527317 GCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTA 165527258 Query 1978 CGTCAGTGAA 1987 | | |||||| Sbjct 165527257 CATTAGTGAA 165527248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8451062794768