Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_005338.2 Length=2761 Score E Sequences producing significant alignments: (Bits) Value seq13 80.6 5e-12 >seq13 Length=197258317 Score = 80.6 bits (88), Expect = 5e-12 Identities = 199/301 (66%), Gaps = 2/301 (1%) Strand=Plus/Plus Query 1702 TCCTGGATTGCAAAGAAAGATGGTGGGTATCCCACCTTTAATTTGAGTGGGCTTACCGTA 1761 |||||| ||||| || | ||| || ||||| || ||||| | || | ||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1762 TTTGATGTTGCTTTGCCAGTCCATCTGGGCCCCCATAAACTCTTTAAAATGCTTTAGATA 1821 |||| ||| ||||| | || || || ||||||||||| | ||||| | || Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1822 ATGCGGATCAACGTCATCAATGACGTTATACCAAGCATCATTTGAAAATA--TCTTAGGG 1879 || || | |||||| |||| ||| || | | || ||||| || | | || Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1880 CTAAGATCCAGGTGTCCACACATGTAATTATGGACTCCTAATGACCGTGCCCATAACGTC 1939 | || |||| || ||||| | ||| ||||| ||| || || | |||||| | || Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1940 TTCCCTGTTCTTGTTGCTCCTTCAACAACGATGCTCATCGGTCTTCTCGGCCGCGCAGCG 1999 || ||||| || | | | ||| | | || | | ||||| |||||||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGCG 89851499 Query 2000 G 2000 | Sbjct 89851500 G 89851500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8726258326896