Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_005347.1 Length=2786 Score E Sequences producing significant alignments: (Bits) Value seq13 77.0 6e-11 >seq13 Length=197258317 Score = 77.0 bits (84), Expect = 6e-11 Identities = 199/301 (66%), Gaps = 2/301 (1%) Strand=Plus/Plus Query 1696 CCTGGATTGCAGAGGAAGATAGAGGGAATTCCGCCTTTAATTTGAATTGGCTTCCCGTAC 1755 ||||| ||||| || | ||| | || || || ||||| | || ||||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1756 TTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCAAAGAATTCTTTCCAGTGCTTTAGATAG 1815 || ||| ||||| | || || |||| || |||||||||||||| | || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1816 TGCGGGTCGACGTCATCAATGACGTTATACCAAGCATCATTAGAATAAAC-CTTTGGACT 1874 || || | |||||| |||| ||| || | | || || || | || ||| || Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1875 T-AAGTCTAAATGACCACATAAGTAATTATGTGGCCCTAATGACCTAGCCCAAACAGTTT 1933 | | ||| | ||||||||||| ||| |||||| || || || || ||||| | |||| Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1934 TGCCGGTACGACTATCGCCCTCTACTACAATACTATTCGGCCTCCACGGCCGCGCAGCGG 1993 | || || | ||| | |||| | || || || ||| |||||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGCGG 89851500 Query 1994 C 1994 | Sbjct 89851501 C 89851501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8803052876520