Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_005348.1 Length=2773 Score E Sequences producing significant alignments: (Bits) Value seq16 89.7 9e-15 seq11 82.4 1e-12 seq13 78.8 2e-11 >seq16 Length=188620566 Score = 89.7 bits (98), Expect = 9e-15 Identities = 180/265 (68%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 1729 CTTTAATTTGAACTGGCTTTCCGTATTTTGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCA 1788 |||| || ||||| || |||| ||| || || ||||||||||||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1789 TCAGCTCTTTAAAATGCTTTAAATAATGTGGGTCGACATCATCAATGACGTTATA--CCA 1846 | || || | || |||||| | ||||||| || | |||||| |||||||| ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1847 TGCGTTATTGGAGTACACCTTTGGGCTTAAGTCTAGGTGCCCACATAAATAATTATGTGG 1906 | | || ||| | ||| | || | ||||||| | |||| ||||||||||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1907 ACCCAGAGAACGGGCCCATACAGTTTTGCCGGTCCGACTGTCACCCTCTAAGACTATACT 1966 |||| || | ||||| | || || ||||| | ||||| || | | ||| Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1967 CTTGGGTCTCCATGGCCGCGCAGCG 1991 || |||||| |||| || | |||| Sbjct 2249095 CTGAGGTCTCAATGGGCGTGAAGCG 2249071 >seq11 Length=168460249 Score = 82.4 bits (90), Expect = 1e-12 Identities = 197/298 (66%), Gaps = 0/298 (0%) Strand=Plus/Minus Query 1695 CCTGGATTGCAGAGGAAAATACTGGGAATGCCCCCTTTAATTTGAACTGGCTTTCCGTAT 1754 ||||| ||||| || | || | || ||||| ||||| | || |||||| |||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1755 TTTGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATCAGCTCTTTAAAATGCTTTAAATAA 1814 || || ||||| | || ||| || || || | |||||| | ||| | || || Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1815 TGTGGGTCGACATCATCAATGACGTTATACCATGCGTTATTGGAGTACACCTTTGGGCTT 1874 ||||| | ||||| |||| ||| || ||||| || ||| | || ||| | | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1875 AAGTCTAGGTGCCCACATAAATAATTATGTGGACCCAGAGAACGGGCCCATACAGTTTTG 1934 ||| | || ||||||| || |||||| |||| ||| | ||||| | |||||| Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1935 CCGGTCCGACTGTCACCCTCTAAGACTATACTCTTGGGTCTCCATGGCCGCGCAGCGG 1992 | |||| | ||| | || || | | ||| |||||| ||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCGCAGCGG 165527306 >seq13 Length=197258317 Score = 78.8 bits (86), Expect = 2e-11 Identities = 199/300 (66%), Gaps = 2/300 (1%) Strand=Plus/Plus Query 1695 CCTGGATTGCAGAGGAAAATACTGGGAATGCCCCCTTTAATTTGAACTGGCTTTCCGTAT 1754 ||||| ||||| || | || | || ||||| ||||| | || |||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1755 TTTGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATCAGCTCTTTAAAATGCTTTAAATAA 1814 || ||| ||||| | | ||| || || || | |||||| | ||||| || || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1815 TGTGGGTCGACATCATCAATGACGTTATACCATGCGTTATTGGAGTACACCTTTGGG-CT 1873 ||||| | ||||| |||| ||| || ||| || ||| | || ||| || Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1874 TAAG-TCTAGGTGCCCACATAAATAATTATGTGGACCCAGAGAACGGGCCCATACAGTTT 1932 | || || | || ||||||| || |||||| |||| ||| | ||||| | |||| Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1933 TGCCGGTCCGACTGTCACCCTCTAAGACTATACTCTTGGGTCTCCATGGCCGCGCAGCGG 1992 | || |||| |||| |||| || ||| ||| |||||| ||||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGCGG 89851500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8761453571760