Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_005635.1 Length=2728 Score E Sequences producing significant alignments: (Bits) Value seq16 122 2e-24 seq13 114 2e-22 seq11 100 5e-18 >seq16 Length=188620566 Score = 122 bits (134), Expect = 2e-24 Identities = 162/223 (73%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 1743 GGCTTTCCGTATTTTACATTTGACTGCCAGTCTCTTTGCGCGCCCATGAATTCTTTGAAA 1802 || |||| ||| || |||| |||||||||||||| || || | ||||| || | Sbjct 2249319 GGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAAGTAATTCCTTCCAG 2249260 Query 1803 TGTTTCAAATAATGTGGATCAACGTCATCGATGACGTTATA--CCATGCCTCGTTAGAGA 1860 ||||| ||| | ||||| | ||||| ||| || |||||||| ||| | |||||||||| Sbjct 2249259 TGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA--CATCGTTAGAGA 2249202 Query 1861 AAATCTTATCGTTCAGATCCAAATGGCCGCAAAGATAATTATGAGGACCCAATGCTCTTG 1920 ||| | || |||| || |||| || | | ||||||||| ||||||| ||||| Sbjct 2249201 AAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCTTCCCAATGATCTTG 2249142 Query 1921 CCCACATGGTTTTACCCGTCCGACTATCACCTTCAATCACTAT 1963 ||||||| || || || || | |||||||||||| | ||| Sbjct 2249141 CCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTAT 2249099 >seq13 Length=197258317 Score = 114 bits (126), Expect = 2e-22 Identities = 209/302 (69%), Gaps = 7/302 (2%) Strand=Plus/Plus Query 1695 CCTGGGTTACAGAGAAAGATGGTGGGGATTCCACCTTTAATGTGTGTGGGCTTTCCGTAT 1754 |||||||| || || | ||| || || || || ||||| | | | ||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1755 TTTACATTTGACTGCCAGTCTCTTTGCGCGCCCATGAATTCTTTGAAATGTTTCAAATAA 1814 || || |||||||| | | ||| || || || || ||||| | || || || || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1815 TGTGGATCAACGTCATCGATGACGTTATACCATGCCTCGTTAGAGAAAA--TCTTATCGT 1872 ||||| | ||||||||||| ||| || | ||||| ||||| | | || | | Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1873 TCAGATCCAAATGGCCGCAAAGATAATTATGAGGACCCAATGCTCTTGCCCACATGGTTT 1932 | || |||| ||| || || | || ||||| ||||| | |||||||||||| |||| Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1933 TACCCGTCCGACTATCACCTTCAATCACTAT--ACTTATGGGTCTC-TCCGGCGCGCAGC 1989 |||| |||| ||||| ||| || | ||| ||| | |||||| || | |||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCGCGCAGC 89851498 Query 1990 GG 1991 || Sbjct 89851499 GG 89851500 >seq11 Length=168460249 Score = 100 bits (110), Expect = 5e-18 Identities = 204/300 (68%), Gaps = 5/300 (2%) Strand=Plus/Minus Query 1695 CCTGGGTTACAGAGAAAGATGGTGGGGATTCCACCTTTAATGTGTGTGGGCTTTCCGTAT 1754 |||||||| || || | ||| || || || || ||||| | | | ||||| |||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1755 TTTACATTTGACTGCCAGTCTCTTTGCGCGCCCATGAATTCTTTGAAATGTTTCAAATAA 1814 || | |||||||| | || ||| || || || || ||||| | || | || || Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1815 TGTGGATCAACGTCATCGATGACGTTATACCATGCCTCGTTAGAGAAAATCTTATCGTTC 1874 ||||| | ||||||||||| ||| || || | ||| ||||| | || | ||| Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1875 AGATCCAAATGGCCGCAAAGATAATTATGAGGACCCAATGCTCTTGCCCACATGGTTTTA 1934 | |||| ||| || || | || ||||| ||||| | |||||||||||| ||||| Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1935 CCCGTCCGACTATCACCTTCAATCACTAT--ACTTATGGGTCTC-TCCGGCGCGCAGCGG 1991 | |||| || ||||| || | | | ||| | |||||| || | |||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCGGCCGCGCAGCGG 165527306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8620660041312