Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_005807.1 Length=2784 Score E Sequences producing significant alignments: (Bits) Value seq13 96.9 6e-17 >seq13 Length=197258317 Score = 96.9 bits (106), Expect = 6e-17 Identities = 205/303 (68%), Gaps = 5/303 (2%) Strand=Plus/Plus Query 1713 CCTGGATTGCAGAGGAAGATTGTTGGGATACCTCCTTTAATTTGAATTGGTTTCCCGTAC 1772 ||||| ||||| || | ||||||||| || |||||||| | || |||| || |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1773 TTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTTAGATAG 1832 ||| ||| ||||| | ||| || || || |||||||| ||||||| | || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1833 TGGGGATCCACGTCATCAATGACGTTGTACCAGGCCTCGTTGCTGTAAACCTTGGGG-CT 1891 || || | |||||| |||| |||||| | ||||| | | || || || Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1892 TAAG-TCAAGATGGCCGCAAAGGTAGTTATGACGTGGACTCAAAGACCTGGCCCACATGG 1950 | || || | ||| || || | ||||||||| | | |||||| || |||||||| | Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTT---CCCAAAGATCTTGCCCACATTG 89851437 Query 1951 TCTTCCCTGTCCTGCTATCCCCTTCTATCACAATGCTAATGGGCCTCCATGGCCGCGCAG 2010 | || ||||||||| ||| | |||||| | || | || ||| |||||||||| Sbjct 89851438 TTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAG 89851497 Query 2011 CGG 2013 ||| Sbjct 89851498 CGG 89851500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8796652983480