Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_005812.1 Length=2752 Score E Sequences producing significant alignments: (Bits) Value seq16 125 1e-25 seq13 93.3 7e-16 seq11 93.3 7e-16 >seq16 Length=188620566 Score = 125 bits (138), Expect = 1e-25 Identities = 171/233 (73%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 1718 CTTTAATTTGAATTGGTTTACCGTACTTTGTA--TTGCTTTGCCAGTCCCTCTGGGCCCC 1775 |||| || |||| ||||| | |||||| | | |||||| ||||||| || || || || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTT-GCACTTTGCTT-GCCAGTCTCTTTGTGCACC 2249276 Query 1776 CATGAATTCTTTTAAGTGCTTTAGATAATGCGGATCTACGTCATCAATGACGTTATA--C 1833 | ||||| || |||| |||| | | || || | |||| |||||| |||||||| | Sbjct 2249275 AAGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTC 2249216 Query 1834 CAAGCATCATTGCTGTACACTTTTGGGCTAAGGTCTAGATGTCCACACAAATAATTATGA 1893 || |||| || | | || | || | | ||||| || |||| ||||||||||| Sbjct 2249215 CA--CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGT 2249158 Query 1894 GGGCCCAATGATCTGGCCCACATTGTTTTGCCGGTTCTAGATTCACCTTCAAT 1946 ||||||||||| ||||||||||| || |||||||| || ||||||||||| Sbjct 2249157 CTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAAT 2249105 >seq13 Length=197258317 Score = 93.3 bits (102), Expect = 7e-16 Identities = 204/302 (68%), Gaps = 4/302 (1%) Strand=Plus/Plus Query 1684 CCAGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATTGGTTTACCGTAC 1743 || || ||||| || | ||| || || || || ||||| | || |||| || |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA- 89851259 Query 1744 TTTGTA-TTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCTTTTAAGTGCTTTAGATA 1802 |||| | || ||||| | || || || || || ||||| ||||||| | || Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1803 ATGCGGATCTACGTCATCAATGACGTTATACCAAGCATCATTGCTGTACACTTTTGGGC- 1861 || || || |||||| |||| ||| || | | || || | | |||||| Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1862 -TAAGGTCTAGATGTCCACACAAATAATTATGAGGGCCCAATGATCTGGCCCACATTGTT 1920 | ||||| | ||| ||||| | || ||||| ||||| ||||| |||||||||||| Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1921 TTGCCGGTTCTAGATTCACCTTCAATCACCATTCCTATGGGTCTCCACGGCCGCGCAGCG 1980 || || || || || |||| ||| || | ||| | |||||| ||||||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGCG 89851499 Query 1981 GC 1982 || Sbjct 89851500 GC 89851501 Score = 77.0 bits (84), Expect = 6e-11 Identities = 133/192 (69%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 1791 GTGCTTTAGATAATGCGGATCTACGTCATCAATGACGTTATACCAAGCATCATTGCTGTA 1850 |||||| | || || || || |||||| |||| ||| || ||| | || | | Sbjct 172133881 GTGCTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAA 172133940 Query 1851 CACTTTTGGGCTAAGGTCTAGATGTCCACACAAATAATTATGAGGGCCCAATGATCTGGC 1910 |||||| | | ||||| | || ||||| | || ||||| |||| ||||| || Sbjct 172133941 GACTTTTTTGTTGAGGTCCAATTG-CCACATATGTAGTTATGTCTTCCCATGGATCTTGC 172133999 Query 1911 CCACATTGTTTTGCCGGTTCTAGATTCACCTTCAATCACCATTCCTATGGGTCTCCACGG 1970 ||||||||||||||| ||||| || | |||||| || | | | | |||||| ||| Sbjct 172134000 CCACATTGTTTTGCCTGTTCTGGAATTACCTTCTATGATTACTGACTTTGGTCTCACCGG 172134059 Query 1971 CCGCGCAGCGGC 1982 ||| |||||||| Sbjct 172134060 CCGTGCAGCGGC 172134071 >seq11 Length=168460249 Score = 93.3 bits (102), Expect = 7e-16 Identities = 202/300 (67%), Gaps = 2/300 (1%) Strand=Plus/Minus Query 1684 CCAGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATTGGTTTACCGTAC 1743 || || ||||| || | ||| || || || || ||||| | || |||| || ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA- 165527545 Query 1744 TTTGTATTGCTT-TGCCAGTCCCTCTGGGCCCCCATGAATTCTTTTAAGTGCTTTAGATA 1802 |||| | | ||||| | | || || || || || ||||| ||||| | | || Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1803 ATGCGGATCTACGTCATCAATGACGTTATACCAAGCATCATTGCTGTACACTTTTGGGCT 1862 || || || |||||| |||| ||| || ||| | || | | |||||| | | Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425 Query 1863 AAGGTCTAGATGTCCACACAAATAATTATGAGGGCCCAATGATCTGGCCCACATTGTTTT 1922 |||| | ||| ||||| | || ||||| ||||| ||||| |||||||||||||| Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Query 1923 GCCGGTTCTAGATTCACCTTCAATCACCATTCCTATGGGTCTCCACGGCCGCGCAGCGGC 1982 || || || || | ||||| || | || | |||||| ||||||||||||||| Sbjct 165527364 GCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCGCAGCGGC 165527305 Score = 80.6 bits (88), Expect = 5e-12 Identities = 152/220 (69%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 1247 GTCCATATTCTGAAGATCAGGAAACACTTGTGAATCCCCAACGCCTTCCTGAGGTTGTGG 1306 |||| |||| ||||| ||||| | |||||||| ||| ||| || ||||||| | Sbjct 165517307 GTCCGTATTTTGAAGTTCAGGTATGCCTTGTGAAGATCCAGGTGCTTTCTTAGGTTGTTG 165517248 Query 1307 TTGAATTGGATCTGTATCTCCAAATAGTC-GTTGTTGTCGTTGAATGGT-TTGCTGTTGT 1364 ||||| | ||||| | ||| | ||||| ||| || | | | |||| | || Sbjct 165517247 TTGAACCGTATCTGCAGCTCGATGTAGTCCGTTTCCATCATACACGGACGTTGCAG--GT 165517190 Query 1365 GCTTCAGCACCTTGAAATACAGGGGATTTGGAACTTCCCATATATACACGCCATTCTGCG 1424 ||||| |||||||| || || ||||| | | || ||| || || ||||| || | Sbjct 165517189 GCTTCTTTACCTTGAAGTAGAGAGGATTGGATATCTCGGATAAGTAAACTCCATTTTGGG 165517130 Query 1425 CTTGAGCTGCAGTAATGGTTTCCCCTGTGCGTAAATCCAT 1464 ||||| ||||||||| | ||||||||||||||||| Sbjct 165517129 CTTGATGTGCAGTAATTAACTTGCCTGTGCGTAAATCCAT 165517090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8697458794464