Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_005842.1 Length=2763 Score E Sequences producing significant alignments: (Bits) Value seq13 109 1e-20 seq16 105 1e-19 seq11 98.7 2e-17 >seq13 Length=197258317 Score = 109 bits (120), Expect = 1e-20 Identities = 211/304 (69%), Gaps = 8/304 (3%) Strand=Plus/Plus Query 1696 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTA 1755 |||||| ||||| || | ||| || || || || ||||| | || |||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1756 CTTTGTATTT-GATTGCCATTCTCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGAT 1814 |||| | || || ||||| | | ||| || || || || || || ||||||| | | Sbjct 89851260 -TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGT 89851318 Query 1815 AGTGGGGATCGACGTCATCAATGATGTTGTACCAGGCATCATTACTGTAGA-TTTTTGGG 1873 | || || | |||||| ||||||||||| | || || | ||| ||||| Sbjct 89851319 ATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTT 89851378 Query 1874 CTA-AGGTCTAGATGACCACATAGATAATTATGTGGACCCAACGACCTAGCCCACATTGT 1932 || ||||| | ||||||||||| || |||||| ||||| || || ||||||||||| Sbjct 89851379 CTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGT 89851438 Query 1933 TTTACCAGTACGACTATCACTCTCAATAACAAT--ACTTATGGGCCTAATGGGCCGCGCA 1990 |||||| || | |||||| || || | || ||| | || || || ||||||||| Sbjct 89851439 TTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCGCGCA 89851496 Query 1991 GTGG 1994 | || Sbjct 89851497 GCGG 89851500 >seq16 Length=188620566 Score = 105 bits (116), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 1731 CTTTAATTTGAACTGGCTTCCCGTACTTTGTATTTGATTGCCATTCTCTTTGGGCCCCCA 1790 |||| || ||||| || || | |||||| |||| |||||| |||||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1791 TGAATTCCTTAAAGTGCTTTAGATAGTGGGGATCGACGTCATCAATGATGTTGTA--CCA 1848 |||||||| |||| |||| | | || || | |||| |||||| | ||| || ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1849 GGCATCATTACTGTAGATTTTTGGGCTAAGGTCTAGATGACCACATAGATAATTATGTGG 1908 |||| ||| | | | | || | | ||||| || ||||| || |||||||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1909 ACCCAACGACCTAGCCCACATTGTTTTACCAGTACGACTATCACTCTCAAT 1959 ||||| || || ||||||||||| || || || | ||||| ||||| Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAAT 2249105 >seq11 Length=168460249 Score = 98.7 bits (108), Expect = 2e-17 Identities = 168/241 (70%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 1696 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTA 1755 |||||| ||||| || | ||| || || || || ||||| | || |||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1756 CTTTGTATTT-GATTGCCATTCTCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGAT 1814 |||| | | || ||||| | || ||| || || || || || || ||||| | | | Sbjct 165527544 -TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGT 165527486 Query 1815 AGTGGGGATCGACGTCATCAATGATGTTGTACCAGGCATCATTACTGTAGATTTTTGGGC 1874 | || || | |||||| ||||||||||| || | || | ||| |||| | Sbjct 165527485 ATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGT 165527426 Query 1875 TAAGGTCTAGATGACCACATAGATAATTATGTGGACCCAACGACCTAGCCCACATTGTTT 1934 | |||| | ||||||||||| || |||||| ||||| || || ||||||||||||| Sbjct 165527425 TGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTT 165527366 Query 1935 T 1935 | Sbjct 165527365 T 165527365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8732658222992