Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_005843.1 Length=2606 Score E Sequences producing significant alignments: (Bits) Value seq13 183 5e-43 seq16 178 2e-41 seq11 176 7e-41 >seq13 Length=197258317 Score = 183 bits (202), Expect = 5e-43 Identities = 281/398 (71%), Gaps = 12/398 (3%) Strand=Plus/Plus Query 1537 CTCCTGGATTGCAGAGCACGATTGATGGTATCCCACCTTTAATTTGAACTGGCTTCCCGT 1596 ||||||| ||||| || | ||||| |||||| || ||||| | || |||||| ||| Sbjct 89851199 CTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGT 89851258 Query 1597 ATTTGCAGTTGGACTGCCAGTCCTTTTGGGCCCCAATCAGCTCTTTCCAATGTTTCATCT 1656 |||||||||| |||||||| | | ||| || ||||| | ||||||||| || || Sbjct 89851259 ATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTG------CT 89851312 Query 1657 TTAAATATTGCGGAGTGACGTCATCAATGACGTTGTACTCCACATCATTTGAGTAAAC-- 1714 | || ||||| || | | |||||| |||| |||||| || || || |||||| | || Sbjct 89851313 TGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTT 89851372 Query 1715 CCTAGGATTGAAATCCAAGTGTCCACTCAAATAATTATGTGGTCCTAAAGCACGAGCCCA 1774 | |||| |||| || |||| | || |||||| ||| |||| | ||||| Sbjct 89851373 TTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCA 89851432 Query 1775 CATCGTCTTTCCTGTCCTCGAATCACCCTCGATGATTAT--ACTAATAGGTCTCTCCGGC 1832 ||| || || |||||||| ||||||| || |||||||| ||| | |||||| |||| Sbjct 89851433 CATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGC 89851490 Query 1833 CGCGCAGCGGCACCCCTACCAAAATAATCATCAGCCCACTCTTGCATCTCGTCCGGAACG 1892 ||||||||||| ||||| || ||| ||||| | ||||| || || || || Sbjct 89851491 CGCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACA 89851550 Query 1893 TTCGTGAAGGAGGAGAGTGGAAACGGAGGAACCCATGG 1930 || |||||| || | ||| || ||| ||| |||| Sbjct 89851551 TTAGTGAAGCTTGATAATGGGAATGGACTTACCTATGG 89851588 >seq16 Length=188620566 Score = 178 bits (196), Expect = 2e-41 Identities = 242/336 (72%), Gaps = 10/336 (3%) Strand=Plus/Minus Query 1573 CTTTAATTTGAACTGGCTTCCCGTATTTGCAGTTGGACTGCCAGTCCTTTTGGGCCCCAA 1632 |||| || ||||| || || | ||| ||||| || | |||||||| |||| || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1633 TCAGCTCTTTCCAATGTTTCATCTTTAAATATTGCGGAGTGACGTCATCAATGACGTTGT 1692 | || ||||| ||||| |||| |||| || | |||| |||||| ||||| | Sbjct 2249273 GTAATTCCTTCCAGTGTTT------TAAACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1693 ACTCCACATCATTTGAGTAAACCCTAGGATTGAAATCCAAGTGTCCACTCAAATAATTAT 1752 | |||||||| || ||| ||||| ||||||| || || || | ||||| |||||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1753 GTGGTCCTAAAGCACGAGCCCACATCGTCTTTCCTGTCCTCGAATCACCCTCGATGATTA 1812 || ||| || | | |||||||| |||||||| || || |||||||| || || |||| Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1813 T--ACTAATAGGTCTCTCCGGCCGCGCAGCGGCACCCCTACCAAAATAATCATCAGCCCA 1870 | ||| ||||||| || || | |||| | |||||||||||| ||||| Sbjct 2249099 TTGACT--GAGGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 1871 CTCTTGCATCTCGTCCGGAACGTTCGTGAAGGAGGA 1906 | |||||| | | || ||||||||||| || || Sbjct 2249041 TTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq11 Length=168460249 Score = 176 bits (194), Expect = 7e-41 Identities = 347/509 (68%), Gaps = 12/509 (2%) Strand=Plus/Minus Query 1533 CCCTCTCCTGGATTGCAGAGCACGATTGATGGTATCCCACCTTTAATTTGAACTGGCTTC 1592 ||| ||||||| ||||| |||| ||||| |||||| || ||||| | || |||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1593 CCGTATTTGCAGTTGGACTGCCAGTCCTTTTGGGCCCCAATCAGCTCTTTCCAATGTTTC 1652 ||||||||||||| |||||||| | ||| || ||||| | ||||||||| || Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTG---- 165527494 Query 1653 ATCTTTAAATATTGCGGAGTGACGTCATCAATGACGTTGTACTCCACATCATTTGAGTAA 1712 | | || ||||| || | | |||||| |||| |||||| || | | |||||| | Sbjct 165527493 --CATGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1713 ACCCTAGGATTGAAATCCAAGTGTCCACTCAAATAATTATGTGGTCCTAAAGCACGAGCC 1772 || | ||| |||| || |||| | || |||||| ||| |||| | ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1773 CACATCGTCTTTCCTGTCCTCGAATCACCCTCGATGATTAT--ACTAATAGGTCTCTCCG 1830 ||||| || || | |||||| |||| ||| | |||||| | ||| | |||||| || Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCG 165527318 Query 1831 GCCGCGCAGCGGCACCCCTACCAAAATAATCATCAGCCCACTCTTGCATCTCGTCCGGAA 1890 ||||||||||||| |||||| || ||| ||||| ||||||| || || || | Sbjct 165527317 GCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTA 165527258 Query 1891 CGTTCGTGAAGGAGGAGAGTGGAAACGGAGGAACCCATGGTTCCGGAGCCTTAGCGAATA 1950 | || |||||| || | || || ||| |||||||| | | || | | | | Sbjct 165527257 CATTAGTGAAGCTTGATAACGGGAATGGACTTACCCATGGAGCTGTAGGGATTTCATAGA 165527198 Query 1951 TCCTGTCTAAGTTACTAG-ACAGGTTGTGATATTGAAAAAGAAACTCTTTGGGGAGCTTC 2009 || || | ||| ||| | |||||||| || || ||||| ||| |||| | | Sbjct 165527197 CTCTATCCAGGTT-GTAGTTGATGTTGTGATGCTGTAACAGAAAGTCTCTGGGTTGTTCA 165527139 Query 2010 TCTTTAATAATTCGCATGGCTTCTTCTTT 2038 ||| |||||| ||| ||||| ||||| Sbjct 165527138 TCTCTAATAACCTGCAATGCTTCATCTTT 165527110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8230266379456