Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_005844.1 Length=2742 Score E Sequences producing significant alignments: (Bits) Value seq13 100 5e-18 seq11 95.1 2e-16 seq16 91.5 3e-15 >seq13 Length=197258317 Score = 100 bits (110), Expect = 5e-18 Identities = 208/305 (68%), Gaps = 10/305 (3%) Strand=Plus/Plus Query 1669 CCAGGATTGCAGAGGAAGATAGTGGGAATTCCTCCTTTAATTTGAACTGGCTTCCCGTAC 1728 || || ||||| || | ||| || || || |||||||| | || |||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1729 TTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAATGCTTTAGGTA- 1787 || ||| ||||| | ||| || || || |||||||| | ||||| | ||| Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1788 -GTGGGGGTCGACGTCATCAATCACGTTGTACCAAGCATCATTACTGTAGACCTTTGGGC 1846 |||| ||| | |||||| || | |||||| | | || || | |||| ||| Sbjct 89851321 TGTGGTGGT--ATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTT 89851378 Query 1847 --TCAGGTCCAGGTGTCCACATAAATAATTGTGTGGGCCTAAAGACCTGGCCCACATTGT 1904 | ||||||| || ||||||| || || ||| || ||||| || ||||||||||| Sbjct 89851379 CTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGT 89851438 Query 1905 CTTCCCTGTCCTACTCTCGCCCTCTATGACAAT--ACTTTTGGGTCTCCATGGCCGCGCA 1962 || |||||||| || | ||||||| || ||||| |||||| ||||||||| Sbjct 89851439 TTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGCA 89851496 Query 1963 GCGGC 1967 ||||| Sbjct 89851497 GCGGC 89851501 >seq11 Length=168460249 Score = 95.1 bits (104), Expect = 2e-16 Identities = 205/303 (68%), Gaps = 8/303 (3%) Strand=Plus/Minus Query 1669 CCAGGATTGCAGAGGAAGATAGTGGGAATTCCTCCTTTAATTTGAACTGGCTTCCCGTAC 1728 || || ||||| || | ||| || || || |||||||| | || |||||| ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1729 TTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAATGCTTTAGGTA- 1787 || || ||||| | | ||| || || || |||||||| | ||| | | ||| Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1788 -GTGGGGGTCGACGTCATCAATCACGTTGTACCAAGCATCATTACTGTAGACCTTTGGGC 1846 |||| ||| | |||||| || | |||||| ||| | || | |||| ||| | Sbjct 165527483 TGTGGTGGT--ATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGT 165527426 Query 1847 TCAGGTCCAGGTGTCCACATAAATAATTGTGTGGGCCTAAAGACCTGGCCCACATTGTCT 1906 | |||||| || ||||||| || || ||| || ||||| || ||||||||||| | Sbjct 165527425 TGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTT 165527366 Query 1907 TCCCTGTCCTACTCTCGCCCTCTATGACAAT--ACTTTTGGGTCTCCATGGCCGCGCAGC 1964 | | |||||| | || | ||||| | ||||| |||||| ||||||||||| Sbjct 165527365 TGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGC 165527308 Query 1965 GGC 1967 ||| Sbjct 165527307 GGC 165527305 >seq16 Length=188620566 Score = 91.5 bits (100), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 1703 CTTTAATTTGAACTGGCTTCCCGTACTT-CGTGTTGCTTTGCCAGTCCCTTTGGGCCCCC 1761 |||| || ||||| || || | |||||| | |||||| ||||||| ||||| || || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTT-GCCAGTCTCTTTGTGCACCA 2249275 Query 1762 ATGAACTCTTTAAAATGCTTTAGGTAGTGGGGGTCGACGTCATCAATCACGTTGTA--CC 1819 | || || || | || |||| | || |||| |||| |||||| ||||| || || Sbjct 2249274 AGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCC 2249215 Query 1820 AAGCATCATTACTGTAGACCTTTGGGCTCAGGTCCAGGTGTCCACATAAATAATTGTGTG 1879 | |||| ||| | | ||| | || ||| ||| | | |||| ||||||||| ||| Sbjct 2249214 A--CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTC 2249157 Query 1880 GGCCTAAAGACCTGGCCCACATTGTCTTCCCTGTCCT 1916 || || || || |||||||||||||| || || || Sbjct 2249156 TTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCT 2249120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8665459313984