Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12]
1,528 sequences; 3,027,844,945 total letters
Query= NC_005844.1
Length=2742
Score E
Sequences producing significant alignments: (Bits) Value
seq13 100 5e-18
seq11 95.1 2e-16
seq16 91.5 3e-15
>seq13
Length=197258317
Score = 100 bits (110), Expect = 5e-18
Identities = 208/305 (68%), Gaps = 10/305 (3%)
Strand=Plus/Plus
Query 1669 CCAGGATTGCAGAGGAAGATAGTGGGAATTCCTCCTTTAATTTGAACTGGCTTCCCGTAC 1728
|| || ||||| || | ||| || || || |||||||| | || |||||| ||||
Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260
Query 1729 TTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAATGCTTTAGGTA- 1787
|| ||| ||||| | ||| || || || |||||||| | ||||| | |||
Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320
Query 1788 -GTGGGGGTCGACGTCATCAATCACGTTGTACCAAGCATCATTACTGTAGACCTTTGGGC 1846
|||| ||| | |||||| || | |||||| | | || || | |||| |||
Sbjct 89851321 TGTGGTGGT--ATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTT 89851378
Query 1847 --TCAGGTCCAGGTGTCCACATAAATAATTGTGTGGGCCTAAAGACCTGGCCCACATTGT 1904
| ||||||| || ||||||| || || ||| || ||||| || |||||||||||
Sbjct 89851379 CTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGT 89851438
Query 1905 CTTCCCTGTCCTACTCTCGCCCTCTATGACAAT--ACTTTTGGGTCTCCATGGCCGCGCA 1962
|| |||||||| || | ||||||| || ||||| |||||| |||||||||
Sbjct 89851439 TTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGCA 89851496
Query 1963 GCGGC 1967
|||||
Sbjct 89851497 GCGGC 89851501
>seq11
Length=168460249
Score = 95.1 bits (104), Expect = 2e-16
Identities = 205/303 (68%), Gaps = 8/303 (3%)
Strand=Plus/Minus
Query 1669 CCAGGATTGCAGAGGAAGATAGTGGGAATTCCTCCTTTAATTTGAACTGGCTTCCCGTAC 1728
|| || ||||| || | ||| || || || |||||||| | || |||||| |||||
Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544
Query 1729 TTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAATGCTTTAGGTA- 1787
|| || ||||| | | ||| || || || |||||||| | ||| | | |||
Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484
Query 1788 -GTGGGGGTCGACGTCATCAATCACGTTGTACCAAGCATCATTACTGTAGACCTTTGGGC 1846
|||| ||| | |||||| || | |||||| ||| | || | |||| ||| |
Sbjct 165527483 TGTGGTGGT--ATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGT 165527426
Query 1847 TCAGGTCCAGGTGTCCACATAAATAATTGTGTGGGCCTAAAGACCTGGCCCACATTGTCT 1906
| |||||| || ||||||| || || ||| || ||||| || ||||||||||| |
Sbjct 165527425 TGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTT 165527366
Query 1907 TCCCTGTCCTACTCTCGCCCTCTATGACAAT--ACTTTTGGGTCTCCATGGCCGCGCAGC 1964
| | |||||| | || | ||||| | ||||| |||||| |||||||||||
Sbjct 165527365 TGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGC 165527308
Query 1965 GGC 1967
|||
Sbjct 165527307 GGC 165527305
>seq16
Length=188620566
Score = 91.5 bits (100), Expect = 3e-15
Identities = 153/217 (71%), Gaps = 6/217 (3%)
Strand=Plus/Minus
Query 1703 CTTTAATTTGAACTGGCTTCCCGTACTT-CGTGTTGCTTTGCCAGTCCCTTTGGGCCCCC 1761
|||| || ||||| || || | |||||| | |||||| ||||||| ||||| || ||
Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTT-GCCAGTCTCTTTGTGCACCA 2249275
Query 1762 ATGAACTCTTTAAAATGCTTTAGGTAGTGGGGGTCGACGTCATCAATCACGTTGTA--CC 1819
| || || || | || |||| | || |||| |||| |||||| ||||| || ||
Sbjct 2249274 AGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCC 2249215
Query 1820 AAGCATCATTACTGTAGACCTTTGGGCTCAGGTCCAGGTGTCCACATAAATAATTGTGTG 1879
| |||| ||| | | ||| | || ||| ||| | | |||| ||||||||| |||
Sbjct 2249214 A--CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTC 2249157
Query 1880 GGCCTAAAGACCTGGCCCACATTGTCTTCCCTGTCCT 1916
|| || || || |||||||||||||| || || ||
Sbjct 2249156 TTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCT 2249120
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 8665459313984
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |