Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_005845.1 Length=2739 Score E Sequences producing significant alignments: (Bits) Value seq16 78.8 2e-11 >seq16 Length=188620566 Score = 78.8 bits (86), Expect = 2e-11 Identities = 159/229 (69%), Gaps = 9/229 (4%) Strand=Plus/Minus Query 1707 CTTTAATCATGACTGGCTTTCCGTACTT-CGTGTTGCTTTGCCAGTCTCTCTGGGCCCCC 1765 |||| ||| || || |||| |||||| | |||||| |||||||||| || || || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTT-GCCAGTCTCTTTGTGCACCA 2249275 Query 1766 ATGAATTCTTTAAAATGCTTTAGATAGTGGGGGTCTACGTCATCAATGACGTTGTA--CC 1823 | ||||| || | || |||| | | || |||| |||| |||||| ||||| || || Sbjct 2249274 AGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCC 2249215 Query 1824 AAGCATCATTACTGTACACCTTTGGACTTAAGTC-AAGTGGCCGCACAAGTAATTGTGTC 1882 | |||| ||| | | ||| | ||| | ||||| || | || | || ||||| |||| Sbjct 2249214 A--CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTC 2249157 Query 1883 --CCCAAAGAACGCGCCCACGCAGTTTTGCCCGTTCTACTATCACCCTC 1929 ||||| || | |||||| || || || ||||| |||||| || Sbjct 2249156 TTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTC 2249108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8655859469840