Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_005850.1 Length=2560 Score E Sequences producing significant alignments: (Bits) Value seq16 174 3e-40 seq13 123 4e-25 seq11 105 1e-19 >seq16 Length=188620566 Score = 174 bits (192), Expect = 3e-40 Identities = 241/336 (72%), Gaps = 10/336 (3%) Strand=Plus/Minus Query 1527 CTTTAATTTGAACTGGCTTTCCGTATTTGCAATTGGTTTGCCAGTCCCTTTGGGCCCCTA 1586 |||| || ||||| || |||| ||| ||||| || | ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1587 TCAATTCTTTCCAATGCTTTAATTTCAAATAATTAGGGCTTATGTCATCAGTGACGTTAT 1646 ||||| ||||| || ||||| | | | ||| | | || |||| | ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA------ACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1647 ATTCCACGTCATTAGAATATACCCTATTATTAAAATCAAGATGGCCACTTAGATAGTTAT 1706 ||||||| || ||||| | ||| || ||| || || | || ||||||| ||| |||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1707 GTTTACCTAATGACCTGGCCCACATTGTCTTTCCGGTTCGACTATCGCCTTCTATGATGA 1766 || | || ||||| || |||||||||||||||||||||| ||| ||||| || || | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1767 T--ACTGATCGGTCTTTCTGCCCGCGCAGCGGCACCCCTTCCAAAATAATCGTCAGCCCA 1824 | ||||| ||||| || || | |||| | | ||||||||| || ||||| Sbjct 2249099 TTGACTGA--GGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 1825 TTCCTGCATCTCATCTGGAACGTTTGTGAAGGAGGA 1860 || ||||| | | ||| ||||| ||||| || || Sbjct 2249041 TTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq13 Length=197258317 Score = 123 bits (136), Expect = 4e-25 Identities = 249/367 (68%), Gaps = 12/367 (3%) Strand=Plus/Plus Query 1493 CCTGGATTGCACAGCACGATTGACGGGATTCCACCTTTAATTTGAACTGGCTTTCCGTAT 1552 ||||| ||||| || | ||||| || || || ||||| | || |||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1553 TTGCAATTGGTTTGCCAGTCCCTTTGGGCCCCTATCAATTCTTTCCAATGCTTTAATTTC 1612 ||||| || | ||||| | ||| || || || || |||||||| ||||| || | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGT-- 89851318 Query 1613 AAATAATTAGGGCTTATGTCATCAGTGACGTTATATTCCACGTCATTAGAATATACCCTA 1672 | | || ||||||||| ||| ||| || || ||||| || || | || | Sbjct 89851319 ----ATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1673 T--TATTAAAATCAAGATGGCCACTTAGATAGTTATGTTTACCTAATGACCTGGCCCACA 1730 | | || | || | ||| |||| || ||||||||||| || || || || ||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1731 TTGTCTTTCCGGTTCGACTATCGCCTTCTATGATGAT--ACTGATCGGTCTTTCTGCCCG 1788 |||| || || || | ||| | ||||||||| || ||| | ||||| | ||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCG 89851492 Query 1789 CGCAGCGGCACCCCTTCCAAAATAATCGTCAGCCCATTCCTGCATCTCATCTGGAACGTT 1848 ||||||||| |||||| || || ||||||| |||| || ||||| || || Sbjct 89851493 CGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACATT 89851552 Query 1849 TGTGAAG 1855 |||||| Sbjct 89851553 AGTGAAG 89851559 Score = 84.2 bits (92), Expect = 4e-13 Identities = 159/231 (69%), Gaps = 5/231 (2%) Strand=Plus/Plus Query 1627 TATGTCATCAGTGACGTTATATTCCACGTCATTAGAATATACCCTATTATTAAAATCAAG 1686 ||||||||| ||| ||| || || ||| || || | || | || || | || | Sbjct 172133902 TATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTGAGGTCCA- 172133960 Query 1687 ATGGCCACTTAGATAGTTATGTTTACCTAATGACCTGGCCCACATTGTCTTTCCGGTTCG 1746 || ||||| || ||||||||| | || | || || ||||||||||| || || |||| Sbjct 172133961 ATTGCCACATATGTAGTTATGTCTTCCCATGGATCTTGCCCACATTGTTTTGCCTGTTCT 172134020 Query 1747 ACTATCGCCTTCTATGATGATACTGA--TCGGTCTTTCTGCCCGCGCAGCGGCACCCCTT 1804 || ||||||||||| |||||| | ||||| | | ||| |||||||| | Sbjct 172134021 GGAATTACCTTCTATGAT--TACTGACTTTGGTCTCACCGGCCGTGCAGCGGCTTGTATA 172134078 Query 1805 CCAAAATAATCGTCAGCCCATTCCTGCATCTCATCTGGAACGTTTGTGAAG 1855 ||||| || || |||||||| |||| || ||| | || || |||||| Sbjct 172134079 CCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTAGTACATTAGTGAAG 172134129 >seq11 Length=168460249 Score = 105 bits (116), Expect = 1e-19 Identities = 247/371 (67%), Gaps = 10/371 (3%) Strand=Plus/Minus Query 1487 CCCTCACCTGGATTGCACAGCACGATTGACGGGATTCCACCTTTAATTTGAACTGGCTTT 1546 ||| | ||||| ||||| |||| ||||| || || || ||||| | || |||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1547 CCGTATTTGCAATTGGTTTGCCAGTCCCTTTGGGCCCCTATCAATTCTTTCCAATGCTTT 1606 ||||||||||| | | ||||| | | ||| || || || || |||||||| ||| Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGC--- 165527493 Query 1607 AATTTCAAATAATTAGGGCTTATGTCATCAGTGACGTTATATTCCACGTCATTAGAATAT 1666 | || || | || ||||||||| ||| ||| || || ||| || || | Sbjct 165527492 ---ATGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1667 ACCCTATTATTAAAATCAAGATGGCCACTTAGATAGTTATGTTTACCTAATGACCTGGCC 1726 || | || || || | ||| |||| || ||||||||| | || || || || ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1727 CACATTGTCTTTCCGGTTCGACTATCGCCTTCTATGATGAT--ACTGATCGGTCTTTCTG 1784 |||||||| || | || | || |||| |||||| | ||| | ||||| | Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCG 165527318 Query 1785 CCCGCGCAGCGGCACCCCTTCCAAAATAATCGTCAGCCCATTCCTGCATCTCATCTGGAA 1844 |||||||||||| ||||| || || |||||||| |||| || ||||| | Sbjct 165527317 GCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTA 165527258 Query 1845 CGTTTGTGAAG 1855 | || |||||| Sbjct 165527257 CATTAGTGAAG 165527247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8083068769248