Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_005852.1 Length=2575 Score E Sequences producing significant alignments: (Bits) Value seq16 196 8e-47 seq13 159 6e-36 seq11 141 2e-30 >seq16 Length=188620566 Score = 196 bits (216), Expect = 8e-47 Identities = 246/336 (73%), Gaps = 10/336 (3%) Strand=Plus/Minus Query 1561 CTTTAATTTGAACAGGCTTTCCATATTTACAGTTGGACTGCCAGTCTTTCTGGGCCCCAA 1620 |||| || ||||| || |||| || || || || | ||||||||| | || || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1621 TCAATTCTTTCCAGTGCTTTATTTTTAAATATTGTGGGTTGACATCATCAATGACGTTAT 1680 ||||| |||||||| ||||||| |||||||||| || | |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTG------TTTTAAACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1681 ACTCTACATCGTTTGAGTAAACCCTAGAATTGAAATCCATGTGACCACTTAGGTAATTAT 1740 | || |||||||| ||| ||||| ||| ||| || || | | |||||||| ||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1741 GAGAACCTAATGCACGTGCCCACATTGTTTTCCCTGTTCTAGAATCACCTTCAACGATTA 1800 | || |||| | |||||||||||| || || ||||| ||||||||||||| |||| Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1801 --AACTTATAGGTCTTTCTGGCCGCGCAGCGGAATCCCTCCCAAAATAATCATCTGCCCA 1858 ||| |||||| ||| || | |||| || |||||||||||||||||| Sbjct 2249099 TTGACT--GAGGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 1859 TTCTTGCATATCAACTGGAACATTTATGAATGACGA 1894 || ||||||| | ||| || || |||| || || Sbjct 2249041 TTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq13 Length=197258317 Score = 159 bits (176), Expect = 6e-36 Identities = 266/382 (70%), Gaps = 12/382 (3%) Strand=Plus/Plus Query 1511 ATAGGAAGACCCCTCCCCTGGATTGCAAAGCACGATAGCGGGAATTCCACCTTTAATTTG 1570 ||| ||| | || | ||||| ||||| || | ||| | || || || ||||| | | Sbjct 89851185 ATATGAAAAACCAACTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAG 89851244 Query 1571 AACAGGCTTTCCATATTTACAGTTGGACTGCCAGTCTTTCTGGGCCCCAATCAATTCTTT 1630 | ||||| | ||||| ||||| |||||||| | || || || ||||| || ||||| Sbjct 89851245 ACTTGGCTTGTCGTATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTT 89851304 Query 1631 CCAGTGCTTTATTTTTAAATATTGTGGGTTGACATCATCAATGACGTTATACTCTACATC 1690 ||||||||| | | |||||||| | ||||| |||| ||| || || || || Sbjct 89851305 CCAGTGCTTGA------AGTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTC 89851358 Query 1691 GTTTGAGTAAACCCTAGAAT--TGAAATCCATGTGACCACTTAGGTAATTATGAGAACCT 1748 ||||||| | || | | ||| ||||| ||||||| || ||| ||||| || Sbjct 89851359 GTTTGAGAAGACTTTTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCC 89851418 Query 1749 AATGCACGTGCCCACATTGTTTTCCCTGTTCTAGAATCACCTTCAACGATTA--AACTTA 1806 || | | ||||||||||||||| ||||| || ||||||| ||| | ||||| ||| Sbjct 89851419 AAAGATCTTGCCCACATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT-- 89851476 Query 1807 TAGGTCTTTCTGGCCGCGCAGCGGAATCCCTCCCAAAATAATCATCTGCCCATTCTTGCA 1866 | ||||| ||||||||||||| | ||||| || ||||||||||| ||||| Sbjct 89851477 TTGGTCTCATCGGCCGCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCA 89851536 Query 1867 TATCAACTGGAACATTTATGAA 1888 || |||| ||||| |||| Sbjct 89851537 GGTCTTCTGGTACATTAGTGAA 89851558 Score = 113 bits (124), Expect = 7e-22 Identities = 513/798 (64%), Gaps = 29/798 (4%) Strand=Plus/Plus Query 1644 TTTAAATATTGTGGGTTGACATCATCAATGACGTTATACTCTACATCGTTTGAGTAAACC 1703 || || |||||||| | ||||| |||| ||| || || | | ||||||| | || Sbjct 172133885 TTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACT 172133944 Query 1704 CTAGAATTGAAATCCATGTGACCACTTAGGTAATTATGAGAACCTAATGCACGTGCCCAC 1763 | |||| |||| || |||| || ||| ||||| || | | | ||||||| Sbjct 172133945 TTTTTGTTGAGGTCCAATTG-CCACATATGTAGTTATGTCTTCCCATGGATCTTGCCCAC 172134003 Query 1764 ATTGTTTTCCCTGTTCTAGAATCACCTTCAACGATTA--AACTTATAGGTCTTTCTGGCC 1821 |||||||| |||||||| |||| |||||| | ||||| ||| | ||||| | |||| Sbjct 172134004 ATTGTTTTGCCTGTTCTGGAATTACCTTCTATGATTACTGACT--TTGGTCTCACCGGCC 172134061 Query 1822 GCGCAGCGGAATCCCTCCCAAAATAATCATCTGCCCATTCTTGCATATCAACTGGAACAT 1881 | ||||||| | | ||||| || ||||||||||||||||| || || | |||| Sbjct 172134062 GTGCAGCGGCTTGTATACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTAGTACAT 172134121 Query 1882 TTATGAATGACGATAGTCGAAAAGGAGGGACCCATGGTTCAGGAGGT-TTAC---GA-AA 1936 | |||| |||| | || ||| |||||||| | | |||| || | || Sbjct 172134122 TAGTGAAGCTTGATAACGGGAATGGACATACCCATGGAGCTGTAGGTATTTCATAGACTC 172134181 Query 1937 TATTTTGGTTGCATTGGCTAACAAGTTATGATGTTG-AAGAAAGAAGTGTTGCGGTTGTT 1995 ||| ||||| | | | | ||| ||||| || |||| | |||| | ||||||| Sbjct 172134182 TATCCAGGTTGAAGTTG-----ATGTTGTGATGCTGTAAGAGA-AAGTCTCTGGGTTGTT 172134235 Query 1996 CTTCCTTTATAATCTGCAACGCTTCTTCAGATGACCTAGCA-TTTAATGCCTTTGCGTA- 2053 | || | |||| |||||| || || || | | | ||| | ||| | |||| Sbjct 172134236 CATCTCTAATAACCTGCAATGCCTCGTC-TTTAGCGTTGCACACCAGTGCTCTGCCGTAT 172134294 Query 2054 --TGTGTCATTAGCAGATTGCTGACCTCCTCTAGCAGATCTTCCGTCGATCTGGAATTCC 2111 ||||| | | | | |||| ||| | |||| |||| | |||| || | Sbjct 172134295 GTTGTGTTGGGATCGAAATTCTGA---TTTCTGGTAGATGTTCCATGTTTCTGAAACATC 172134351 Query 2112 CCCCATTGAATTGTGTCTCCGTCCTTATCAATGTAGGACTTGACATCGGAGCTGGATTTA 2171 ||||| | ||| || ||||| || | ||||| ||||| | | ||||||||| Sbjct 172134352 CCCCAGTCGATTACATCACCGTCTTTCTGCATGTATCTTCTGACAAAGAAACTGGATTTA 172134411 Query 2172 GCTCCCTGAATGTTCGGATGGAAATGTGTTGACCTGGTTGGGGAAACCAGATCGAAGAAT 2231 || ||| |||| ||||| || | ||| | ||||| | || || |||||| Sbjct 172134412 GCAGACTGTATGTATGGATGACAAATTTCAGACGTATTTGGGTGATTGAGGTCAAAGAAT 172134471 Query 2232 CTGTTATTTTTGCACTGGTACTTGCCTTCGAACTGGATAAGCACATGCAGATGCGGTTCC 2291 || ||||| || | | | || ||| | ||| || | ||||| ||||| || | Sbjct 172134472 CTTGGATTTTGACATTTGAATTTCTTTTCCATCTGCATCAAAACATGAAGATGAGGCTTG 172134531 Query 2292 CCATCTTCATGCAATTCTTTGCACACTTTAATGAAT-TTCTTGTT---TGTCGGAGTGAT 2347 | ||||| |||| |||| |||| | || || | |||| | || ||| | Sbjct 172134532 TCGTCTTCGTGCAGTTCTATGCAGATAGCGATATATATACTTGATCGCTGAAGGAATTGG 172134591 Query 2348 TAGGTTTTGTAATTGGGAAAGTGCTTCTTCTTTGGATAGAGAGCACTTGGGGTATGTAAG 2407 ||| || | ||| ||| | ||||||||||| | |||| || |||||||| | Sbjct 172134592 TAGAACTTTCAGTTGTTCAAGATAATATTCTTTGGATACATAGCATTTTGGGTATGTGAT 172134651 Query 2408 GAAATAATTCTTGGCATT 2425 ||| || ||||||||||| Sbjct 172134652 GAAGTAGTTCTTGGCATT 172134669 >seq11 Length=168460249 Score = 141 bits (156), Expect = 2e-30 Identities = 261/380 (69%), Gaps = 11/380 (3%) Strand=Plus/Minus Query 1511 ATAGGAAGACCCCTCCCCTGGATTGCAAAGCACGATAGCGGGAATTCCACCTTTAATTTG 1570 ||| ||| |||| | ||||| ||||| |||| ||| | || || || ||||| | | Sbjct 165527618 ATATGAAAACCCA-CTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAG 165527560 Query 1571 AACAGGCTTTCCATATTTACAGTTGGACTGCCAGTCTTTCTGGGCCCCAATCAATTCTTT 1630 | ||||| || ||||| |||| |||||||| | | || || ||||| || ||||| Sbjct 165527559 ACTTGGCTTGCCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTT 165527500 Query 1631 CCAGTGCTTTATTTTTAAATATTGTGGGTTGACATCATCAATGACGTTATACTCTACATC 1690 ||||||| | || |||||||| | ||||| |||| ||| || || | | Sbjct 165527499 CCAGTGC------ATGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTT 165527446 Query 1691 GTTTGAGTAAACCCTAGAATTGAAATCCATGTGACCACTTAGGTAATTATGAGAACCTAA 1750 ||||||| | || | ||| ||||| ||||||| || ||| ||||| || || Sbjct 165527445 GTTTGAGAAGACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAA 165527386 Query 1751 TGCACGTGCCCACATTGTTTTCCCTGTTCTAGAATCACCTTCAACGAT--TAAACTTATA 1808 | | ||||||||||||||| | ||| || |||| ||||| | ||| | ||| | Sbjct 165527385 AGATCTTGCCCACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TT 165527328 Query 1809 GGTCTTTCTGGCCGCGCAGCGGAATCCCTCCCAAAATAATCATCTGCCCATTCTTGCATA 1868 ||||| ||||||||||||| | ||||| || ||||||||||||||||| Sbjct 165527327 GGTCTCATCGGCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGG 165527268 Query 1869 TCAACTGGAACATTTATGAA 1888 || |||| ||||| |||| Sbjct 165527267 TCTTCTGGTACATTAGTGAA 165527248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8131067989968