Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_005855.1 Length=2779 Score E Sequences producing significant alignments: (Bits) Value seq16 123 4e-25 seq13 105 1e-19 seq11 93.3 7e-16 >seq16 Length=188620566 Score = 123 bits (136), Expect = 4e-25 Identities = 169/233 (73%), Gaps = 5/233 (2%) Strand=Plus/Minus Query 1755 TTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGAAGTGCTTTAAATAATGCGGG 1814 |||||| ||||||| || || || || | |||||||| |||| |||||| | || ||| Sbjct 2249300 TTGCTT-GCCAGTCTCTTTGTGCACCAAGTAATTCCTTCCAGTGTTTTAAACATTGTGGG 2249242 Query 1815 TCTACGTCATCAATGACGTTGTACCACGCATCATTACTGTACACCTTTGGACTTAGGTCT 1874 | |||| |||||| ||||| || | |||| ||| | | ||| | ||| | | |||| Sbjct 2249241 TTAACGTTATCAATAACGTTATATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCT 2249182 Query 1875 AGATGTCCACATAAATAGTTATGTGGGCCTAGAGACCTAGCCCACATTGTTTTGCCTGTT 1934 | || |||| |||||| |||||| || | || || ||||||||||| || || ||| Sbjct 2249181 AAATAACCACTTAAATAATTATGTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTT 2249122 Query 1935 CTGCTATCACCCTCGATGATAAT--ACTGTTAGGTCTCCATGGCCGCGCAGCG 1985 || |||||| || || || || |||| ||||||| |||| || | |||| Sbjct 2249121 CTTGAATCACCTTCAATTATTATTGACTG--AGGTCTCAATGGGCGTGAAGCG 2249071 >seq13 Length=197258317 Score = 105 bits (116), Expect = 1e-19 Identities = 208/303 (69%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 1688 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCCCCTTTAATTTGAATGGGCTTCCCATA 1747 |||||| ||||| || | ||| || || || || ||||| | || | ||||| | || Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1748 CTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGAAGTGCTTTAAATA 1807 || ||| ||||| | || || || || || || || ||||||| || || Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1808 ATGCGGGTCTACGTCATCAATGACGTTGTA--CCACGCATCATTACTGTACACCTTTGGA 1865 || || || |||||| |||| |||||| | ||| || || | | || ||| Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACG--TCGTTTGAGAAGACTTTTTCT 89851377 Query 1866 -CTT-AGGTCTAGATGTCCACATAAATAGTTATGTGGGCCTAGAGACCTAGCCCACATTG 1923 ||| ||||| | ||| ||||||| ||||||||| || | ||| || |||||||||| Sbjct 89851378 TCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTG 89851437 Query 1924 TTTTGCCTGTTCTGCTATCACCCTCGATGATAATACTGTTAGGTCTCCATGGCCGCGCAG 1983 |||| ||||| ||| ||||| || ||||| || || |||||| |||||||||| Sbjct 89851438 TTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAG 89851497 Query 1984 CGG 1986 ||| Sbjct 89851498 CGG 89851500 Score = 87.8 bits (96), Expect = 3e-14 Identities = 137/193 (71%), Gaps = 5/193 (3%) Strand=Plus/Plus Query 1796 GTGCTTTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCATTACTGTA 1855 |||||| || || || || || |||||| |||| |||||| || | || | | Sbjct 172133881 GTGCTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAA 172133940 Query 1856 CACCTTTGGACTTAGGTCTAGATGTCCACATAAATAGTTATGTGGGCCTAGAGACCTAGC 1915 || ||| | ||||| | || ||||||| ||||||||| || | || || || Sbjct 172133941 GACTTTTTTGTTGAGGTCCAATTG-CCACATATGTAGTTATGTCTTCCCATGGATCTTGC 172133999 Query 1916 CCACATTGTTTTGCCTGTTCTGCTATCACCCTCGATGATAATACTG--TTAGGTCTCCAT 1973 |||||||||||||||||||||| || ||| || ||||| ||||| || |||||| Sbjct 172134000 CCACATTGTTTTGCCTGTTCTGGAATTACCTTCTATGAT--TACTGACTTTGGTCTCACC 172134057 Query 1974 GGCCGCGCAGCGG 1986 ||||| ||||||| Sbjct 172134058 GGCCGTGCAGCGG 172134070 >seq11 Length=168460249 Score = 93.3 bits (102), Expect = 7e-16 Identities = 200/299 (67%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 1688 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCCCCTTTAATTTGAATGGGCTTCCCATA 1747 |||||| ||||| || | ||| || || || || ||||| | || | ||||| || || Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1748 CTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGAAGTGCTTTAAATA 1807 || || ||||| | | || || || || || || || ||||| | || || Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1808 ATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCATTACTGTACACCTTTGGACT 1867 || || || |||||| |||| |||||| || | || | | || ||| | Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425 Query 1868 TAGGTCTAGATGTCCACATAAATAGTTATGTGGGCCTAGAGACCTAGCCCACATTGTTTT 1927 |||| | ||| ||||||| ||||||||| || | ||| || |||||||||||||| Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Query 1928 GCCTGTTCTGCTATCACCCTCGATGATAATACTGTTAGGTCTCCATGGCCGCGCAGCGG 1986 || ||| ||| || ||| | ||||| | || |||||| ||||||||||||| Sbjct 165527364 GCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCGCAGCGG 165527306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8780653250880