Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_006358.1 Length=2724 Score E Sequences producing significant alignments: (Bits) Value seq13 109 9e-21 seq11 109 9e-21 seq16 105 1e-19 >seq13 Length=197258317 Score = 109 bits (120), Expect = 9e-21 Identities = 207/302 (69%), Gaps = 6/302 (2%) Strand=Plus/Plus Query 1618 CCAGGATTGCAGAGGAAGATTGTTGGGATTCCTCCTTTAATTTGAATAGGTTTCCCGTAC 1677 || || ||||| || | ||||||||| || |||||||| | || | || || |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1678 TTGCAGTTCGATTGCCAGTCTCTCTGGGCCCCCATAAATTCCTTCATATGTTTGAGGAAG 1737 |||||||| || ||||| | | || || || ||||| || ||| || |||| | | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1738 TGCGGATCTACGTCATCAATGACGTTATA--CCACGCATTATTAGAGTATACTTTTGGGC 1795 || || || |||||| |||| ||| || | ||| | || ||| | |||||| Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACG--TCGTTTGAGAAGACTTTTTCTT 89851378 Query 1796 --TAAGATCCAAATGCCCACACAGATAATTGTGAGGGCCTAAACTCCTGGCCCATAATGT 1853 | || |||| ||| ||||| | || || || || ||| || ||||| | ||| Sbjct 89851379 CTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGT 89851438 Query 1854 TTTACCTGTTCTGGATGGGCCTTCGATTATTATGGATATAGGTCTGAAAGGCCGCGCAGC 1913 ||||||||| ||||| | ||| || ||||| || | ||||| | ||||||||||| Sbjct 89851439 TTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGC 89851498 Query 1914 GG 1915 || Sbjct 89851499 GG 89851500 >seq11 Length=168460249 Score = 109 bits (120), Expect = 9e-21 Identities = 203/298 (68%), Gaps = 0/298 (0%) Strand=Plus/Minus Query 1618 CCAGGATTGCAGAGGAAGATTGTTGGGATTCCTCCTTTAATTTGAATAGGTTTCCCGTAC 1677 || || ||||| || | ||||||||| || |||||||| | || | || || ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1678 TTGCAGTTCGATTGCCAGTCTCTCTGGGCCCCCATAAATTCCTTCATATGTTTGAGGAAG 1737 ||||||| || ||||| | || || || || ||||| || ||| || ||| | | Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1738 TGCGGATCTACGTCATCAATGACGTTATACCACGCATTATTAGAGTATACTTTTGGGCTA 1797 || || || |||||| |||| ||| || || || || ||| | |||||| | | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1798 AGATCCAAATGCCCACACAGATAATTGTGAGGGCCTAAACTCCTGGCCCATAATGTTTTA 1857 | |||| ||| ||||| | || || || || ||| || ||||| | |||||| Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1858 CCTGTTCTGGATGGGCCTTCGATTATTATGGATATAGGTCTGAAAGGCCGCGCAGCGG 1915 | ||| ||||| |||| || ||| | || | ||||| | ||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCGCAGCGG 165527306 >seq16 Length=188620566 Score = 105 bits (116), Expect = 1e-19 Identities = 181/263 (69%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 1652 CTTTAATTTGAATAGGTTTCCCGTACTTGCAGTTCGATTGCCAGTCTCTCTGGGCCCCCA 1711 |||| || |||| ||||| | ||||||||| || | |||||||||||| || || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1712 TAAATTCCTTCATATGTTTGAGGAAGTGCGGATCTACGTCATCAATGACGTTATACCACG 1771 ||||||||| ||||| | | || || | |||| |||||| |||||||| | Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1772 CATTATTAGAGTATACTTTTGGGCTAAGATCCAAATGCCCACACAGATAATTGTGAGGGC 1831 ||| |||||| | || | || | | || |||| |||| | |||||| || | Sbjct 2249213 CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCTTC 2249154 Query 1832 CTAAACTCCTGGCCCATAATGTTTTACCTGTTCTGGATGGGCCTTCGATTATTATGGATA 1891 | || || ||||| | ||| || || ||||| || ||||| |||||||| || Sbjct 2249153 CCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGACT 2249094 Query 1892 TAGGTCTGAAAGGCCGCGCAGCG 1914 |||||| || || || | |||| Sbjct 2249093 GAGGTCTCAATGGGCGTGAAGCG 2249071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8607860249120