Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_006384.1 Length=2735 Score E Sequences producing significant alignments: (Bits) Value seq13 111 3e-21 seq16 107 3e-20 seq11 96.9 6e-17 >seq13 Length=197258317 Score = 111 bits (122), Expect = 3e-21 Identities = 209/303 (69%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 1682 CCTGGATTGCAGAGGAAGATAGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCGTAC 1741 ||||| ||||| || | ||| ||||| || || ||||| | || |||| || |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1742 TTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAG 1801 || ||| ||||| | ||| || || || || ||||| ||||||| | || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1802 TGGGGGTCTACGTCATCAATGACGTTATACCAAGCATCATTATTGTATACTTTTGGG-CT 1860 || || || |||||| |||| ||| || | | || || | | |||||| || Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1861 T-AGATCAAGATGTCCACACAAATAATTGTGTGGTCCCAGTGATCTGGCCCACATTGTTT 1919 | || || | ||| ||||| | || || ||| ||||| ||||| ||||||||||||| Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1920 TACCTGTACGACTATCACCTTCTATCACAAT--ACTTTTGGGTCTCCAAGGCCGCGCAGC 1977 ||||||| | ||||| |||||| | || ||||| |||||| ||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGCAGC 89851498 Query 1978 GGC 1980 ||| Sbjct 89851499 GGC 89851501 >seq16 Length=188620566 Score = 107 bits (118), Expect = 3e-20 Identities = 167/233 (72%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 1716 CTTTAATTTGAATTGGTTTCCCGTACTT--AGTGTTGCTTTGCCAGTCCCTTTGGGCCCC 1773 |||| || |||| ||||| | |||||| | | |||||| ||||||| ||||| || || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACT-TTGCTT-GCCAGTCTCTTTGTGCACC 2249276 Query 1774 CATGAATTCTTTAAAGTGCTTTAGATAGTGGGGGTCTACGTCATCAATGACGTTATA--C 1831 | ||||| || |||| |||| | | || |||| |||| |||||| |||||||| | Sbjct 2249275 AAGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTC 2249216 Query 1832 CAAGCATCATTATTGTATACTTTTGGGCTTAGATCAAGATGTCCACACAAATAATTGTGT 1891 || |||| ||| | | || | || | | || | || |||| |||||||| ||| Sbjct 2249215 CA--CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGT 2249158 Query 1892 GGTCCCAGTGATCTGGCCCACATTGTTTTACCTGTACGACTATCACCTTCTAT 1944 ||||| |||||| ||||||||||| || || || | ||||||||| || Sbjct 2249157 CTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAAT 2249105 >seq11 Length=168460249 Score = 96.9 bits (106), Expect = 6e-17 Identities = 203/301 (67%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 1682 CCTGGATTGCAGAGGAAGATAGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCGTAC 1741 ||||| ||||| || | ||| ||||| || || ||||| | || |||| || ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1742 TTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAG 1801 || || ||||| | | ||| || || || || ||||| ||||| | | || Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1802 TGGGGGTCTACGTCATCAATGACGTTATACCAAGCATCATTATTGTATACTTTTGGGCTT 1861 || || || |||||| |||| ||| || ||| | || | | |||||| | | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1862 AGATCAAGATGTCCACACAAATAATTGTGTGGTCCCAGTGATCTGGCCCACATTGTTTTA 1921 | || | ||| ||||| | || || ||| ||||| ||||| |||||||||||||| Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1922 CCTGTACGACTATCACCTTCTATCACAAT--ACTTTTGGGTCTCCAAGGCCGCGCAGCGG 1979 | ||| | || ||||| ||| | | ||||| |||||| ||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGCGG 165527306 Query 1980 C 1980 | Sbjct 165527305 C 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8643059677648