Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_006631.1 Length=2747 Score E Sequences producing significant alignments: (Bits) Value seq13 102 1e-18 seq11 87.8 3e-14 >seq13 Length=197258317 Score = 102 bits (112), Expect = 1e-18 Identities = 207/303 (68%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 1679 CCAGGATTGCATAGGAAGATTGTCGGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1738 || || |||||||| | |||||| ||||| || ||||| | || |||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1739 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTGAGGAAG 1798 || ||| || ||||| | ||| || || || |||||||| ||||||||| | | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1799 TGCGGGTTGACGTCATCAATGATGTTATACCAAGCATCATTGCTGTACACTTTGGGA-CT 1857 || || | |||||| |||||||| || | | || || | | ||||| || Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1858 TAAG-TCTAGATGGCCACACAAATAGTTGTGTGGGCCTAGCGACCTAGCCCACATCGTCT 1916 | || || | ||| ||||| | ||||| ||| || | || || |||||||| || | Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1917 TCCCGGTCCGACTATCTCCCTCGATGACTAT--ACTTTGAGGTCTAAGGGGCCGCGCAGC 1974 | || |||| ||| | || |||| ||| |||||| |||| | ||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTG--GTCTCATCGGCCGCGCAGC 89851498 Query 1975 GGC 1977 ||| Sbjct 89851499 GGC 89851501 >seq11 Length=168460249 Score = 87.8 bits (96), Expect = 3e-14 Identities = 201/301 (67%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 1679 CCAGGATTGCATAGGAAGATTGTCGGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1738 || || |||||||| | |||||| ||||| || ||||| | || |||||| ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1739 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTGAGGAAG 1798 || || || ||||| | | ||| || || || |||||||| ||||| ||| | | Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1799 TGCGGGTTGACGTCATCAATGATGTTATACCAAGCATCATTGCTGTACACTTTGGGACTT 1858 || || | |||||| |||||||| || ||| | || | | ||||| | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1859 AAGTCTAGATGGCCACACAAATAGTTGTGTGGGCCTAGCGACCTAGCCCACATCGTCTTC 1918 ||| | ||| ||||| | ||||| ||| || | || || |||||||| || || Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1919 CCGGTCCGACTATCTCCCTCGATGACTAT--ACTTTGAGGTCTAAGGGGCCGCGCAGCGG 1976 | |||| || || | |||| | | |||||| |||| | ||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTG--GTCTCATCGGCCGCGCAGCGG 165527306 Query 1977 C 1977 | Sbjct 165527305 C 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8681459054224