Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_006874.1 Length=2777 Score E Sequences producing significant alignments: (Bits) Value seq16 114 2e-22 seq13 111 3e-21 seq11 102 1e-18 >seq16 Length=188620566 Score = 114 bits (126), Expect = 2e-22 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 1728 CTTTAATTTGAATTGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTCTGCGCTCCCA 1787 |||| || |||| || || | |||||| || ||||||||| || || || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1788 TAAATTCCTTAAAGTGCTTTAGATAATGCGGGTCTACGTCATCAATGACGTTGTACCACG 1847 |||||||| |||| |||| | | || |||| |||| |||||| ||||| || | Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1848 CATCATTGCTGTACACCTTTGGGCTGAGATCAAGATGGCCACATAAATAGTTATGTGGTC 1907 |||| || | | ||| | || | | || | || |||| |||||| |||||| || Sbjct 2249213 CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCTTC 2249154 Query 1908 CCAATGACCTGGCCCACATTGTCTTTCCGGTACGACTATCACCCTCGATTA 1958 ||||||| || |||||||||||||||||||| | |||||| || |||| Sbjct 2249153 CCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTA 2249103 >seq13 Length=197258317 Score = 111 bits (122), Expect = 3e-21 Identities = 208/303 (69%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 1694 CCTGGATTGCATAGGAAGATTGTGGGAATTCCGCCTTTAATTTGAATTGGCTTCCCGTAC 1753 ||||| |||||||| | |||||| || || || ||||| | || ||||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1754 TTTGTGTTGCTTTGCCAGTCCCTCTGCGCTCCCATAAATTCCTTAAAGTGCTTTAGATAA 1813 || ||| ||||| | || ||||| ||||| || || ||||||| | || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1814 TGCGGGTCTACGTCATCAATGACGTTGTA--CCACGCATCATTGCTGTACACCTTTGGGC 1871 || || || |||||| |||| |||||| | ||| || || | | || ||| Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACG--TCGTTTGAGAAGACTTTTTCTT 89851378 Query 1872 --TGAGATCAAGATGGCCACATAAATAGTTATGTGGTCCCAATGACCTGGCCCACATTGT 1929 |||| || | ||| ||||||| ||||||||| |||||| || || ||||||||||| Sbjct 89851379 CTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGT 89851438 Query 1930 CTTTCCGGTACGACTATCACCCTCGATTACAATACTATTCGGTCTCCACGGCCGCGCAGC 1989 || || || | ||||| || || | || || |||||| |||||||||||| Sbjct 89851439 TTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGC 89851498 Query 1990 GGC 1992 ||| Sbjct 89851499 GGC 89851501 >seq11 Length=168460249 Score = 102 bits (112), Expect = 1e-18 Identities = 202/299 (68%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 1694 CCTGGATTGCATAGGAAGATTGTGGGAATTCCGCCTTTAATTTGAATTGGCTTCCCGTAC 1753 ||||| |||||||| | |||||| || || || ||||| | || ||||||| ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1754 TTTGTGTTGCTTTGCCAGTCCCTCTGCGCTCCCATAAATTCCTTAAAGTGCTTTAGATAA 1813 || || ||||| | | || ||||| ||||| || || ||||| | | || Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1814 TGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCATTGCTGTACACCTTTGGGCTG 1873 || || || |||||| |||| |||||| || | || | | || ||| | || Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1874 AGATCAAGATGGCCACATAAATAGTTATGTGGTCCCAATGACCTGGCCCACATTGTCTTT 1933 | || | ||| ||||||| ||||||||| |||||| || || ||||||||||| || Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1934 CCGGTACGACTATCACCCTCGATTACAATACTATTCGGTCTCCACGGCCGCGCAGCGGC 1992 | || | || ||| | || | | || |||||| ||||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCGCAGCGGC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8774253357840