Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_006876.1 Length=2768 Score E Sequences producing significant alignments: (Bits) Value seq16 116 6e-23 seq13 102 1e-18 seq11 95.1 2e-16 >seq16 Length=188620566 Score = 116 bits (128), Expect = 6e-23 Identities = 188/266 (71%), Gaps = 6/266 (2%) Strand=Plus/Minus Query 1728 CTTTTATTTGAATTGGCTTCCCGTACTT-CGTGTTGCTTTGCCAGTCCCTTTGTGCCCCC 1786 |||| || |||| || || | |||||| | |||||| ||||||| |||||||| || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTT-GCCAGTCTCTTTGTGCACCA 2249275 Query 1787 ATGAATTCTTTAAAGTGTTTCAGGTAATGCGGATCTACGTCATCAATGACGTTGTACCAC 1846 | ||||| || ||||||| | | || || | |||| |||||| ||||| || | Sbjct 2249274 AGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCC 2249215 Query 1847 GCATCATTGCTGTACACCTTTGGGCTGAGGTCAAGATGGCCGCATAGGTAATTATGTGGA 1906 |||| || | | ||| | || | | ||| | || || | || ||||||||| Sbjct 2249214 ACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCTT 2249155 Query 1907 CCCAATGATCTGGCCCACATTGTCTTCCCGGTTCGACTATCACCTTCAATCACAAT--AC 1964 ||||||||||| |||||||||||||| ||||||| |||||||||||| | || || Sbjct 2249154 CCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGAC 2249095 Query 1965 TAATCGGCCTCCATGGCCGCGCAGCG 1990 | | || ||| |||| || | |||| Sbjct 2249094 TGA--GGTCTCAATGGGCGTGAAGCG 2249071 >seq13 Length=197258317 Score = 102 bits (112), Expect = 1e-18 Identities = 209/306 (68%), Gaps = 10/306 (3%) Strand=Plus/Plus Query 1693 TCCTGGATTGCAGAGGAAGATTGTGGGAATCCCGCCTTTTATTTGAATTGGCTTCCCGTA 1752 |||||| ||||| || | |||||| || || || ||||| | || ||||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1753 CTTCGTGTTGCTTTGCCAGTCCCTTTGTGCCCCCATGAATTCTTTAAAGTGTTTCAGGTA 1812 || ||| ||||| | ||| || || || || ||||| |||| || | ||| Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1813 ATGCGGATCTACGTCATCAATGACGTTGTA--CCACGCATCATTGCTGTACACCTTTGGG 1870 || || || |||||| |||| |||||| | ||| || || | | || ||| Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACG--TCGTTTGAGAAGACTTTTTCT 89851377 Query 1871 C--TGAGGTCAAGATGGCCGCATAGGTAATTATGTGGACCCAATGATCTGGCCCACATTG 1928 ||||||| | ||| || |||| ||| |||||| ||||| ||||| |||||||||| Sbjct 89851378 TCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTG 89851437 Query 1929 TCTTCCCGGTTCGACTATCACCTTCAATCACAAT--ACTAATCGGCCTCCATGGCCGCGC 1986 | || || || | ||||| ||| || | || ||| | || ||| |||||||| Sbjct 89851438 TTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCGCGC 89851495 Query 1987 AGCGGC 1992 |||||| Sbjct 89851496 AGCGGC 89851501 >seq11 Length=168460249 Score = 95.1 bits (104), Expect = 2e-16 Identities = 165/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 1693 TCCTGGATTGCAGAGGAAGATTGTGGGAATCCCGCCTTTTATTTGAATTGGCTTCCCGTA 1752 |||||| ||||| || | |||||| || || || ||||| | || ||||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1753 CTTCGTGTTGCTTTGCCAGTCCCTTTGTGCCCCCATGAATTCTTTAAAGTGTTTCAGGTA 1812 || || ||||| | | ||| || || || || ||||| |||| | | ||| Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1813 ATGCGGATCTACGTCATCAATGACGTTGTACCACGCATCATTGCTGTACACCTTTGGGCT 1872 || || || |||||| |||| |||||| || | || | | || ||| | | Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425 Query 1873 GAGGTCAAGATGGCCGCATAGGTAATTATGTGGACCCAATGATCTGGCCCACATTGTCTT 1932 | |||| | ||| || |||| ||| |||||| ||||| ||||| ||||||||||| || Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8745453839160