Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_006995.1 Length=2746 Score E Sequences producing significant alignments: (Bits) Value seq13 105 1e-19 seq11 100 5e-18 >seq13 Length=197258317 Score = 105 bits (116), Expect = 1e-19 Identities = 208/303 (69%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 1680 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATTGGCTTTCCGTA 1739 |||||| ||||| || | ||| || || || || ||||| | || ||||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1740 TTTTGTATTTGACTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTA 1799 ||| || |||||||| | ||| || || || || ||||| ||||||| | ||| Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1800 GTGGGGATCAACGTCATCGATGACGTTGTACCAGGCGCTGTTCGAATATACCTTGGGG-C 1858 || || | ||||||||||| |||||| || ||| || | || || | Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1859 TTAAG-TCTAGGTGTCCACATAAGTAATTGTGTGGCCCCAGAGACCTGGCCCACGCGGTC 1917 || || || | || ||||||| ||| || ||| |||| ||| || |||||| || Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1918 TTACCTGTACGACTATCACCTTCGATCACGAT--ACTTTTAGGTCTCCACGGCCGCGCAG 1975 |||||||| | ||||| ||| || | || ||||| |||||| ||||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGCAG 89851497 Query 1976 CGG 1978 ||| Sbjct 89851498 CGG 89851500 Score = 77.0 bits (84), Expect = 6e-11 Identities = 149/219 (68%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 2246 TCTGAAATTCTCCCCATTCGATTGTGTCACCGTCCTTGTCCAGATAGGACTTGACGTCGG 2305 ||||||| |||||| |||||| |||||||||| || | || ||| ||||| | Sbjct 89851771 TCTGAAACGTTCCCCAGTCGATTATGTCACCGTCTTTTTGCATATATCTTCTGACGAAGA 89851830 Query 2306 AGCTTGATTTAGCTCCCTGAATATTTGGATGGAAATGTGTTGACCTGGTTGGGGAGACCA 2365 | || |||||||| ||| ||||||||||| || | ||| | ||||| | Sbjct 89851831 AACTGGATTTAGCAGACTGTATATTTGGATGACAAACTTCAGACATATTTGGGTGATTGA 89851890 Query 2366 TGTCGAAGAATCTGTTATTCGAGCATTT--GTATTTCCCCTCGAATTGCATAAGCACGTG 2423 |||| |||||||| ||| ||||| | ||| || | ||||| | || || Sbjct 89851891 TGTCAAAGAATCTTGGATTTTGACATTTCAATTTTTTTTTTCAATCTGCATCAAAACATG 89851950 Query 2424 GAGATGAGGGCTCCCATCCTCGTGTAATTCTCTGCAGAT 2462 |||||||| | | || ||||| |||||||||||||| Sbjct 89851951 TAGATGAGGTTTACTGTCTTCGTGCAATTCTCTGCAGAT 89851989 >seq11 Length=168460249 Score = 100 bits (110), Expect = 5e-18 Identities = 204/301 (68%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 1680 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATTGGCTTTCCGTA 1739 |||||| ||||| || | ||| || || || || ||||| | || ||||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1740 TTTTGTATTTGACTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTA 1799 ||| | |||||||| | | ||| || || || || ||||| ||||| | | ||| Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1800 GTGGGGATCAACGTCATCGATGACGTTGTACCAGGCGCTGTTCGAATATACCTTGGGGCT 1859 || || | ||||||||||| |||||| ||| |||| || | || || | | Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425 Query 1860 TAAGTCTAGGTGTCCACATAAGTAATTGTGTGGCCCCAGAGACCTGGCCCACGCGGTCTT 1919 ||| | || ||||||| ||| || ||| |||| ||| || |||||| || || Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Query 1920 ACCTGTACGACTATCACCTTCGATCACGAT--ACTTTTAGGTCTCCACGGCCGCGCAGCG 1977 | ||| | || ||||| || | | ||||| |||||| ||||||||||||| Sbjct 165527364 GCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGCG 165527307 Query 1978 G 1978 | Sbjct 165527306 G 165527306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8678259106176