Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_007210.2 Length=2758 Score E Sequences producing significant alignments: (Bits) Value seq16 105 1e-19 seq13 100 5e-18 seq11 96.9 6e-17 >seq16 Length=188620566 Score = 105 bits (116), Expect = 1e-19 Identities = 186/267 (70%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 1736 CTTTAATTTGAATGGGCTTGCCGTACTTGGTGTTGCTTTGCCAATCCCGTTGGGCCCCCA 1795 |||| || |||| || || | ||||||| || |||||| || | ||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1796 TGAATTCCTTAAAGTGCTTTAGATAGTGGGGGTCAACATCATCGATGACGTTATA--CCA 1853 |||||||| |||| |||| | | || |||| ||| | ||| || |||||||| ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1854 TGCGTCATTTGAGTAGATCTTGGGGCTCAAGTCTAGATGCCCACAAAGGTAATTATGTGG 1913 | || || ||| | | | | || ||||||||| || |||| | ||||||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1914 GCCTAGTGATCTGGCCCACATTGTCTTCCCAGTTCTACTCTCTCCCTCTACTACTAT--A 1971 || | |||||| |||||||||||||| || ||||| || || || | || ||| | Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1972 CTGACCGGTCGCCAAGGCCGCGCAGCG 1998 |||| |||| | | || || | |||| Sbjct 2249095 CTGA--GGTCTCAATGGGCGTGAAGCG 2249071 >seq13 Length=197258317 Score = 100 bits (110), Expect = 5e-18 Identities = 208/305 (68%), Gaps = 10/305 (3%) Strand=Plus/Plus Query 1702 CCAGGATTGCATAGGAAGATTGTCGGAATGCCCCCTTTAATTTGAATGGGCTTGCCGTAC 1761 || || |||||||| | |||||| || ||||| ||||| | || | |||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1762 TTGGTGTTGCTTTGCCAATCCCGTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGATA- 1820 ||| ||| ||||||| |||| || || || || || || ||||||| | || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1821 -GTGGGGGTCAACATCATCGATGACGTTATACCATGCGTCATTTGAGTAGA--TCTTGGG 1877 |||| ||| | |||||||||| ||| || |||| |||||| ||| | || Sbjct 89851321 TGTGGTGGT--ATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTT 89851378 Query 1878 GCTCAAGTCTAGATGCCCACAAAGGTAATTATGTGGGCCTAGTGATCTGGCCCACATTGT 1937 | | ||| | ||| ||||| | ||| |||||| || | ||||| ||||||||||| Sbjct 89851379 CTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGT 89851438 Query 1938 CTTCCCAGTTCTACTCTCTCCCTCTACTACTATACTGAC--CGGTCGCCAAGGCCGCGCA 1995 || || || || || | |||| | ||| |||| |||| | ||||||||| Sbjct 89851439 TTTACCTGTCCTGGAATCACTTTCTATGATTAT--TGACTTTGGTCTCATCGGCCGCGCA 89851496 Query 1996 GCGGC 2000 ||||| Sbjct 89851497 GCGGC 89851501 >seq11 Length=168460249 Score = 96.9 bits (106), Expect = 6e-17 Identities = 167/241 (69%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 1702 CCAGGATTGCATAGGAAGATTGTCGGAATGCCCCCTTTAATTTGAATGGGCTTGCCGTAC 1761 || || |||||||| | |||||| || ||||| ||||| | || | ||||||||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1762 TTGGTGTTGCTTTGCCAATCCCGTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGATA- 1820 ||| || ||||||| ||||| || || || || || || ||||| | | || Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1821 -GTGGGGGTCAACATCATCGATGACGTTATACCATGCGTCATTTGAGTAGATCTTGGGGC 1879 |||| ||| | |||||||||| ||| || |||| |||||| ||| || | Sbjct 165527483 TGTGGTGGT--ATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGT 165527426 Query 1880 TCAAGTCTAGATGCCCACAAAGGTAATTATGTGGGCCTAGTGATCTGGCCCACATTGTCT 1939 | ||| | ||| ||||| | ||| |||||| || | ||||| ||||||||||| | Sbjct 165527425 TGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTT 165527366 Query 1940 T 1940 | Sbjct 165527365 T 165527365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8716658482752