Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_007211.1 Length=2745 Score E Sequences producing significant alignments: (Bits) Value seq13 100 5e-18 seq11 87.8 3e-14 >seq13 Length=197258317 Score = 100 bits (110), Expect = 5e-18 Identities = 207/305 (68%), Gaps = 10/305 (3%) Strand=Plus/Plus Query 1702 CCAGGATTGCAGAGGAAGATTGTTGGGATCCCGCCTTTAATTTGAACGGGCTTCCCGTAT 1761 || || ||||| || | ||||||||| || || ||||| | || ||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1762 TTTGTATTGGACTGCCAATCCCTTTGGGCCCCCATGAATTCCTTGAAATGTTTTACATAG 1821 || || |||||||||| ||| || || || || || || | || || | || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1822 TGAGGATCAACATCGTCTATTATGTTATACCAGGCTTCGTTGCTGTAAACCCTAGGACTA 1881 || || | || || || ||||| || | ||||| || || || || Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTT--TGAGAAGACTTTTTCTT 89851378 Query 1882 ----AGGTCAATATGACCGCATAAGTAATTATGTGGACCTAATGATCTAGCCCACATGGT 1937 ||||| |||||||| |||| ||| |||||| || || ||||| |||||||| || Sbjct 89851379 CTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGT 89851438 Query 1938 TTTCCCAGTCCTGCTGTCACCTTCTATAACTAT--ACTTATTGGTCTCCATGGCCGCGCA 1995 ||| || |||||| |||| |||||| | ||| |||| ||||||| ||||||||| Sbjct 89851439 TTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTT--TGGTCTCATCGGCCGCGCA 89851496 Query 1996 GCGGC 2000 ||||| Sbjct 89851497 GCGGC 89851501 >seq11 Length=168460249 Score = 87.8 bits (96), Expect = 3e-14 Identities = 201/301 (67%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 1702 CCAGGATTGCAGAGGAAGATTGTTGGGATCCCGCCTTTAATTTGAACGGGCTTCCCGTAT 1761 || || ||||| || | ||||||||| || || ||||| | || ||||| |||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1762 TTTGTATTGGACTGCCAATCCCTTTGGGCCCCCATGAATTCCTTGAAATGTTTTACATAG 1821 || | |||||||||| | ||| || || || || || || | || | | || Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1822 TGAGGATCAACATCGTCTATTATGTTATACCAGGCTTCGTTGCTGTAAACCCTAGGACTA 1881 || || | || || || ||||| || || | ||| | | || | | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1882 AGGTCAATATGACCGCATAAGTAATTATGTGGACCTAATGATCTAGCCCACATGGTTTTC 1941 |||| |||||||| |||| ||| |||||| || || ||||| |||||||| ||||| Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1942 CCAGTCCTGCTGTCACCTTCTATAACTAT--ACTTATTGGTCTCCATGGCCGCGCAGCGG 1999 | |||||| | ||||| ||| | | | |||| ||||||| ||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTT--TGGTCTCATCGGCCGCGCAGCGG 165527306 Query 2000 C 2000 | Sbjct 165527305 C 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8675059158128