Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_007290.1 Length=2751 Score E Sequences producing significant alignments: (Bits) Value seq13 105 1e-19 seq11 96.9 6e-17 >seq13 Length=197258317 Score = 105 bits (116), Expect = 1e-19 Identities = 207/303 (68%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 1685 CCTGGATTGCAGAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1744 ||||| ||||| || | |||||| ||||| || ||||| | || |||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1745 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCCTTAAAGTGCTTGAGGAAA 1804 || ||| || ||||| | ||| || || || ||||| || ||||||||| | | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1805 TGCGGATCGACGTCATCAATGACGTTATACCAGGCGTCGTTATTGTAGACCTTGGGAC-- 1862 || || | |||||| |||| ||| || ||||||| | |||| || Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1863 TCAGGTCCAGATGTCCGCATAAATAGTTATGTGGTCCCAGTGATCTGGCCCACATCGTCT 1922 | ||||||| ||| || |||| ||||||||| ||||| ||||| |||||||| || | Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1923 TCCCCGTTCGACTATCTCCCTCAATTACTAT--ACTTCGAGGTCTAAGGGGCCGCGCAGC 1980 | || || | ||| | || || | ||| |||| | |||| | ||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTG--GTCTCATCGGCCGCGCAGC 89851498 Query 1981 GGC 1983 ||| Sbjct 89851499 GGC 89851501 >seq11 Length=168460249 Score = 96.9 bits (106), Expect = 6e-17 Identities = 203/301 (67%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 1685 CCTGGATTGCAGAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1744 ||||| ||||| || | |||||| ||||| || ||||| | || |||||| ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1745 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCCTTAAAGTGCTTGAGGAAA 1804 || || || ||||| | | ||| || || || ||||| || ||||| ||| | | Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1805 TGCGGATCGACGTCATCAATGACGTTATACCAGGCGTCGTTATTGTAGACCTTGGGACTC 1864 || || | |||||| |||| ||| || |||| ||| | |||| || | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1865 AGGTCCAGATGTCCGCATAAATAGTTATGTGGTCCCAGTGATCTGGCCCACATCGTCTTC 1924 |||||| ||| || |||| ||||||||| ||||| ||||| |||||||| || || Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1925 CCCGTTCGACTATCTCCCTCAATTACTAT--ACTTCGAGGTCTAAGGGGCCGCGCAGCGG 1982 | || | || || | || | | | |||| | |||| | ||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTG--GTCTCATCGGCCGCGCAGCGG 165527306 Query 1983 C 1983 | Sbjct 165527305 C 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8694258846416