Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_007638.1 Length=2757 Score E Sequences producing significant alignments: (Bits) Value seq13 111 3e-21 seq11 104 4e-19 >seq13 Length=197258317 Score = 111 bits (122), Expect = 3e-21 Identities = 209/303 (69%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 1691 CCTGGATTGCAAAGGAAGATTGTTGGGATCCCGCCTTTAATTTGAACTGGCTTGCCGTAC 1750 ||||| ||||| || | ||||||||| || || ||||| | || ||||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1751 TTGGTATTGCTTTGCCAGTCCCTCTGGGCCCCCATAAACTCTTTAAAGTGTTTGAGAAAA 1810 ||| || ||||| | || || || ||||||||||| |||| |||| | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1811 TGGGGATCAACGTCATCGATGACGTTGTACCATGCGTCGTTGCTGTACAC-CTTTGGGCT 1869 || || | ||||||||||| |||||| ||||||| | | || ||| || Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1870 T-AGGTCTAGATGCCCACACAAGTAATTATGTGGACCTAATGACCTGGCCCACATCGTCT 1928 | ||||| | ||| ||||| | ||| |||||| || || || || |||||||| || | Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1929 TCCCTGTTCTACTGTCACCTTCTACCACTA--AACTTAAGGGTCTCAGAGGCCGCGCAGC 1986 | ||||| || |||| ||||| | || |||| ||||||| ||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTT--TGGTCTCATCGGCCGCGCAGC 89851498 Query 1987 GGC 1989 ||| Sbjct 89851499 GGC 89851501 >seq11 Length=168460249 Score = 104 bits (114), Expect = 4e-19 Identities = 207/303 (68%), Gaps = 8/303 (3%) Strand=Plus/Minus Query 1691 CCTGGATTGCAAAGGAAGATTGTTGGGATCCCGCCTTTAATTTGAACTGGCTTGCCGTAC 1750 ||||| ||||| || | ||||||||| || || ||||| | || |||||||||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1751 TTG--GTATTGCTTTGCCAGTCCCTCTGGGCCCCCATAAACTCTTTAAAGTGTTTGAGAA 1808 ||| ||| || |||| | | || || || ||||||||||| |||| ||| Sbjct 165527543 TTGCAGTAAGACT--GCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGT 165527486 Query 1809 AATGGGGATCAACGTCATCGATGACGTTGTACCATGCGTCGTTGCTGTACACCTTTGGGC 1868 | || || | ||||||||||| |||||| |||| ||| | | || ||| | Sbjct 165527485 ATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGT 165527426 Query 1869 TTAGGTCTAGATGCCCACACAAGTAATTATGTGGACCTAATGACCTGGCCCACATCGTCT 1928 | |||| | ||| ||||| | ||| |||||| || || || || |||||||| || | Sbjct 165527425 TGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTT 165527366 Query 1929 TCCCTGTTCTACTGTCACCTTCTACCA--CTAAACTTAAGGGTCTCAGAGGCCGCGCAGC 1986 | | ||| || | ||||| || | | |||| ||||||| ||||||||||| Sbjct 165527365 TGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTT--TGGTCTCATCGGCCGCGCAGC 165527308 Query 1987 GGC 1989 ||| Sbjct 165527307 GGC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8713458534704