Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_007724.1 Length=2745 Score E Sequences producing significant alignments: (Bits) Value seq13 116 6e-23 seq11 107 3e-20 seq16 104 4e-19 >seq13 Length=197258317 Score = 116 bits (128), Expect = 6e-23 Identities = 208/301 (69%), Gaps = 2/301 (1%) Strand=Plus/Plus Query 1686 CCTGGATTGCAGAGGAAGATTGTGGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1745 ||||| ||||| || | |||||| ||||| || ||||| | || |||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1746 TTGGTATTTGACGGCCAGTCCCTTTGGGCCCCCATGAACTCTTTGAAGTGCTTTAGGTAA 1805 ||| || ||| |||| | ||| || || || |||||||| ||||||| | ||| Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1806 TGCGGATCTACGTCATCAATGACGTTATACCATGCGTCGTTGCTGTAGA-TCTTTGGGCT 1864 || || || |||||| |||| ||| || ||||||| | ||| | ||| || Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1865 -GAGATCTAGATGTCCACATAAATAATTATGTGGTCCTAATGACCTGGCCCACATTGTCT 1923 ||| || | ||| ||||||| || |||||| ||| || || || ||||||||||| | Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1924 TTCCCGTACGACTATCGCCCTCCACCACTATACTCATCGGTCTTAACGGCCGCGCAGCGG 1983 | || || | ||| | || | | ||| | | ||||| | |||||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGCGG 89851500 Query 1984 C 1984 | Sbjct 89851501 C 89851501 >seq11 Length=168460249 Score = 107 bits (118), Expect = 3e-20 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 1686 CCTGGATTGCAGAGGAAGATTGTGGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1745 ||||| ||||| || | |||||| ||||| || ||||| | || |||||| ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1746 TTGGTATTTGACGGCCAGTCCCTTTGGGCCCCCATGAACTCTTTGAAGTGCTTTAGGTAA 1805 ||| | ||| |||| | | ||| || || || |||||||| ||||| | | ||| Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1806 TGCGGATCTACGTCATCAATGACGTTATACCATGCGTCGTTGCTGTAGATCTTTGGGCTG 1865 || || || |||||| |||| ||| || |||| ||| | ||| ||| | || Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1866 AGATCTAGATGTCCACATAAATAATTATGTGGTCCTAATGACCTGGCCCACATTGTCTT 1924 | || | ||| ||||||| || |||||| ||| || || || ||||||||||| || Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 >seq16 Length=188620566 Score = 104 bits (114), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 1720 CTTTAATTTGAACTGGCTTCCCGTACTTGGTATTTGACGGCCAGTCCCTTTGGGCCCCCA 1779 |||| || ||||| || || | ||||||| |||| ||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1780 TGAACTCTTTGAAGTGCTTTAGGTAATGCGGATCTACGTCATCAATGACGTTATA--CCA 1837 || || || |||| |||| | || || | |||| |||||| |||||||| ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1838 TGCGTCGTTGCTGTAGATCTTTGGGCTGAGATCTAGATGTCCACATAAATAATTATGTGG 1897 | ||||| | | | | | || | | |||| || |||| ||||||||||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1898 TCCTAATGACCTGGCCCACATTGTCTTTCCCGT 1930 ||| ||||| || ||||||||||||||||| || Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGT 2249123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8675059158128