Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_007726.1 Length=2674 Score E Sequences producing significant alignments: (Bits) Value seq16 199 7e-48 seq13 179 6e-42 seq11 168 1e-38 >seq16 Length=188620566 Score = 199 bits (220), Expect = 7e-48 Identities = 262/363 (72%), Gaps = 14/363 (4%) Strand=Plus/Minus Query 1654 ACTGTAATTTGAACTGGCTTTCCGTATTTGCAATTTGACTGCCAGTCTTTTTGAGCACCA 1713 ||| | || ||||| || |||| ||| ||||| |||| ||||||||| |||| |||||| Sbjct 2249334 ACTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCA 2249275 Query 1714 ATCAATTCCTTCCAGTGCTTTAACTTTAGATAATGCGGTGCGACGTCATCAATGACGTTA 1773 | |||||||||||||| ||||| | | || || |||| |||||| |||||| Sbjct 2249274 AGTAATTCCTTCCAGTGTTTTAA------ACATTGTGGGTTAACGTTATCAATAACGTTA 2249221 Query 1774 TACTCCACTTCGTTCGAGAAAACCTTTGAGTTGAAGTCCAGATGGCCACTCAAGTAATTA 1833 || ||||| ||||| ||||||||| | | || ||||| | || ||||| || |||||| Sbjct 2249220 TATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTA 2249161 Query 1834 TGTGGGCCTAATGCACGAGCCCACATCGTCTTCCCTGTCCTTGAATCACCTTCGACTATC 1893 ||| || |||| | |||||||| ||||| || || |||||||||||||| | ||| Sbjct 2249160 TGTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATT 2249101 Query 1894 AAACTCTTAGGTCTCAATGGCCGCGCAGCTGAACCTCTC----CCAAAATATTCATCGGC 1949 | || |||||||||||| || | ||| || || |||||| ||||| || Sbjct 2249100 ATTGACTGAGGTCTCAATGGGCGTGAAGC----GCTGTCGGATGAAAAATAATCATCTGC 2249045 Query 1950 CCACTCTTGCATCTCGTCGGGAACGTTAGTGAAGGAGGAGAGGGGAAACGGAGGAACCCA 2009 ||| | |||||| | | || ||||| ||||| || || | || | ||| ||||| Sbjct 2249044 CCATTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGACACGGCGTATGGACTTACCCA 2248985 Query 2010 TGG 2012 ||| Sbjct 2248984 TGG 2248982 >seq13 Length=197258317 Score = 179 bits (198), Expect = 6e-42 Identities = 259/365 (71%), Gaps = 8/365 (2%) Strand=Plus/Plus Query 1621 CCAGGATTGCAGAGCACGATTGCTGGGATGCCAACTGTAATTTGAACTGGCTTTCCGTAT 1680 || || ||||| || | ||||| ||| ||||| || | | || |||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1681 TTGCAATTTGACTGCCAGTCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAACTTT 1740 ||||| || |||||||| | || |||||| ||||| || || ||||||||||| || | | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1741 AGATAATGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAGAAAACCTTT 1800 || |||| | |||||| |||| ||| || || || ||||| ||||| || ||| Sbjct 89851321 ------TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1801 GAGT--TGAAGTCCAGATGGCCACTCAAGTAATTATGTGGGCCTAATGCACGAGCCCACA 1858 | ||| ||||| ||| |||| | ||| |||||| || || | | ||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1859 TCGTCTTCCCTGTCCTTGAATCACCTTCGACTATCAAACTCTTAGGTCTCAATGGCCGCG 1918 | || || |||||||| ||||||| ||| | || | ||| ||||||| ||||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCG 89851494 Query 1919 CAGCTGAACCTCTCCCAAAATATTCATCGGCCCACTCTTGCATCTCGTCGGGAACGTTAG 1978 |||| | | ||||| ||| ||| ||||| | ||||| || || || || |||| Sbjct 89851495 CAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACATTAG 89851554 Query 1979 TGAAG 1983 ||||| Sbjct 89851555 TGAAG 89851559 >seq11 Length=168460249 Score = 168 bits (186), Expect = 1e-38 Identities = 276/398 (69%), Gaps = 6/398 (2%) Strand=Plus/Minus Query 1615 CCCTCACCAGGATTGCAGAGCACGATTGCTGGGATGCCAACTGTAATTTGAACTGGCTTT 1674 ||| | || || ||||| |||| ||||| ||| ||||| || | | || |||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1675 CCGTATTTGCAATTTGACTGCCAGTCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTT 1734 ||||||||||| | |||||||| | | |||||| ||||| || || ||||||||| | Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATG 165527490 Query 1735 AACTTTAGATAATGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAGAAA 1794 || || || |||| | |||||| |||| ||| || || | | ||| ||||| Sbjct 165527489 AA------GTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1795 ACCTTTGAGTTGAAGTCCAGATGGCCACTCAAGTAATTATGTGGGCCTAATGCACGAGCC 1854 || ||| |||| ||||| ||| |||| | ||| |||||| || || | | ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1855 CACATCGTCTTCCCTGTCCTTGAATCACCTTCGACTATCAAACTCTTAGGTCTCAATGGC 1914 ||||| || || | |||||| |||| ||||| | || ||| ||||||| ||| Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGC 165527316 Query 1915 CGCGCAGCTGAACCTCTCCCAAAATATTCATCGGCCCACTCTTGCATCTCGTCGGGAACG 1974 |||||||| | | ||||| ||| ||| ||||| ||||||| || || || || Sbjct 165527315 CGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTACA 165527256 Query 1975 TTAGTGAAGGAGGAGAGGGGAAACGGAGGAACCCATGG 2012 ||||||||| || | || || ||| |||||||| Sbjct 165527255 TTAGTGAAGCTTGATAACGGGAATGGACTTACCCATGG 165527218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8447862846720