Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_007730.2 Length=2745 Score E Sequences producing significant alignments: (Bits) Value seq13 102 1e-18 seq11 93.3 7e-16 seq16 87.8 3e-14 >seq13 Length=197258317 Score = 102 bits (112), Expect = 1e-18 Identities = 189/273 (69%), Gaps = 6/273 (2%) Strand=Plus/Plus Query 1680 CCTGGATTGCATAGGAAGATTGTTGGAATCCCTCCTTTAATTTGAATGGGTTTTCCGTAT 1739 ||||| |||||||| | ||||||||| || |||||||| | || | || || ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1740 TTCGTGTTGCTTTGCCACTCCCTTTGGGCCCCCATAAATTCTTTATAGTGTTTTAGGTA- 1798 || ||| ||||| | ||| || || ||||| ||||| |||| || | ||| Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1799 -GTGGGGGTCAACATCGTCAATGACGTTATACCACGCGTCATTGCTGTATACTTTCGGG- 1856 |||| ||| | || || |||| ||| || |||| || | | ||||| Sbjct 89851321 TGTGGTGGT--ATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTT 89851378 Query 1857 CTT-AGGTCCAGGTGACCACATAGGTAGTTGTGTGGGCCTAGTGAACGAGCCCACATTGT 1915 ||| ||||||| |||||||||| |||||| ||| || | || | ||||||||||| Sbjct 89851379 CTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGT 89851438 Query 1916 CTTTCCTGTCCTGCTTTCTCCTTCTATTATTAT 1948 || ||||||||| || | |||||| ||||| Sbjct 89851439 TTTACCTGTCCTGGAATCACTTTCTATGATTAT 89851471 >seq11 Length=168460249 Score = 93.3 bits (102), Expect = 7e-16 Identities = 183/269 (68%), Gaps = 4/269 (1%) Strand=Plus/Minus Query 1680 CCTGGATTGCATAGGAAGATTGTTGGAATCCCTCCTTTAATTTGAATGGGTTTTCCGTAT 1739 ||||| |||||||| | ||||||||| || |||||||| | || | || || |||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1740 TTCGTGTTGCTTTGCCACTCCCTTTGGGCCCCCATAAATTCTTTATAGTGTTTTAGGTA- 1798 || || ||||| | | ||| || || ||||| ||||| |||| | | ||| Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1799 -GTGGGGGTCAACATCGTCAATGACGTTATACCACGCGTCATTGCTGTATACTTTCGGGC 1857 |||| ||| | || || |||| ||| || |||| || | | ||||| | Sbjct 165527483 TGTGGTGGT--ATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGT 165527426 Query 1858 TTAGGTCCAGGTGACCACATAGGTAGTTGTGTGGGCCTAGTGAACGAGCCCACATTGTCT 1917 | |||||| |||||||||| |||||| ||| || | || | ||||||||||| | Sbjct 165527425 TGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTT 165527366 Query 1918 TTCCTGTCCTGCTTTCTCCTTCTATTATT 1946 | | ||||||| | |||| ||| ||| Sbjct 165527365 TGCTTGTCCTGGAATTACCTTTTATGATT 165527337 >seq16 Length=188620566 Score = 87.8 bits (96), Expect = 3e-14 Identities = 168/244 (69%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 1714 CTTTAATTTGAATGGGTTTTCCGTATTT-CGTGTTGCTTTGCCACTCCCTTTGGGCCCCC 1772 |||| || |||| ||||||| ||| || | |||||| |||| || ||||| || || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTT-GCCAGTCTCTTTGTGCACCA 2249275 Query 1773 ATAAATTCTTTATAGTGTTTTAGGTAGTGGGGGTCAACATCGTCAATGACGTTATACCAC 1832 | ||||| || ||||||||| | || |||| ||| | ||||| |||||||| | Sbjct 2249274 AGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCC 2249215 Query 1833 GCGTCATTGCTGTATACTTTCGGGCTTAGGTCCAGGTGACCACATAGGTAGTTGTGTGGG 1892 | || || | | || | || | | ||| | | ||||| || || || ||| Sbjct 2249214 ACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCTT 2249155 Query 1893 CCTAGTGAACGAGCCCACATTGTCTTTCCTGTCCTGCTTTCTCCTTCTATTATTAT--AC 1950 || | ||| | ||||||||||||||||| || || || ||||| |||||||| || Sbjct 2249154 CCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGAC 2249095 Query 1951 TGAG 1954 |||| Sbjct 2249094 TGAG 2249091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8675059158128