Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_007965.1 Length=2557 Score E Sequences producing significant alignments: (Bits) Value seq13 158 2e-35 seq11 132 8e-28 seq16 120 5e-24 seq9 80.6 4e-12 >seq13 Length=197258317 Score = 158 bits (174), Expect = 2e-35 Identities = 260/370 (70%), Gaps = 14/370 (4%) Strand=Plus/Plus Query 1495 CTCCTGGATTGCACAGCACGATTGAGGGTATTCCTCCTTTAGTTTGAACTGGCTTCCCGT 1554 ||||||| ||||| || | ||||| ||||| |||||||| || |||||| ||| Sbjct 89851199 CTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGT 89851258 Query 1555 ATTTACAGTTGGACTGCCAGTCCTTTTGGGCCCCTATCAATTCTTTCCAATGCTTTAATT 1614 |||| ||||| |||||||| | | ||| || || || || |||||||| ||||| || | Sbjct 89851259 ATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGT 89851318 Query 1615 TCAAATAATTAGGGCTTATGTCATCAATGACGTTATATTCGACGTCATTCGAATAGACTC 1674 | | || ||||||||| |||| ||| || || ||||| || || ||||| Sbjct 89851319 ------ATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTT 89851372 Query 1675 TGCCAT--TAAAGTCAAGATGTCCACTAAGATAATTATGTTTACCTAATGAACGGGCCCA 1732 | | | | | ||| | ||| |||| | || |||||||| || || || | ||||| Sbjct 89851373 TTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCA 89851432 Query 1733 CATTGTTTTTCCAGTTCGACTATCTCCTTCGATGATGAT--ACTTATCGGTCT-ATCTGC 1789 ||||||||| || || | ||| | ||| ||||| || ||| | ||||| ||| | Sbjct 89851433 CATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATC-GG 89851489 Query 1790 CCGCGCAGCGGCACCCCTCCCAAAGTAGTTGTCTGCCCATTCTTGCATCTCATCTGGAAC 1849 |||||||||||| |||||||| |||||||||| ||||| || ||||| || Sbjct 89851490 CCGCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTAC 89851549 Query 1850 GTTCGTGAAG 1859 || |||||| Sbjct 89851550 ATTAGTGAAG 89851559 Score = 84.2 bits (92), Expect = 4e-13 Identities = 159/231 (69%), Gaps = 5/231 (2%) Strand=Plus/Plus Query 1631 TATGTCATCAATGACGTTATATTCGACGTCATTCGAATAGACTCTGCCATTAAAGTCAAG 1690 ||||||||| |||| ||| || || ||| || || ||||| | || | ||| | Sbjct 172133902 TATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTGAGGTCCAA 172133961 Query 1691 ATGTCCACTAAGATAATTATGTTTACCTAATGAACGGGCCCACATTGTTTTTCCAGTTCG 1750 || |||| | || |||||| | || | || | |||||||||||||| || |||| Sbjct 172133962 TTG-CCACATATGTAGTTATGTCTTCCCATGGATCTTGCCCACATTGTTTTGCCTGTTCT 172134020 Query 1751 ACTATCTCCTTCGATGATGATACTTA--TCGGTCTATCTGCCCGCGCAGCGGCACCCCTC 1808 || ||||| ||||| |||| | | ||||| | | ||| |||||||| | Sbjct 172134021 GGAATTACCTTCTATGAT--TACTGACTTTGGTCTCACCGGCCGTGCAGCGGCTTGTATA 172134078 Query 1809 CCAAAGTAGTTGTCTGCCCATTCTTGCATCTCATCTGGAACGTTCGTGAAG 1859 |||||||| |||||||||||||||| || ||| | || || |||||| Sbjct 172134079 CCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTAGTACATTAGTGAAG 172134129 >seq11 Length=168460249 Score = 132 bits (146), Expect = 8e-28 Identities = 255/372 (69%), Gaps = 12/372 (3%) Strand=Plus/Minus Query 1491 CCCTCTCCTGGATTGCACAGCACGATTGAGGGTATTCCTCCTTTAGTTTGAACTGGCTTC 1550 ||| ||||||| ||||| |||| ||||| ||||| |||||||| || |||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1551 CCGTATTTACAGTTGGACTGCCAGTCCTTTTGGGCCCCTATCAATTCTTTCCAATGCTTT 1610 |||||||| |||| |||||||| | ||| || || || || |||||||| ||| | Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATG 165527490 Query 1611 AATTTCAAATAATTAGGGCTTATGTCATCAATGACGTTATATTCGACGTCATTCGAATAG 1670 || | | | || ||||||||| |||| ||| || || ||| || || || Sbjct 165527489 AAGT------ATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1671 ACTCTGCCATTAAAGTCAAGATGTCCACTAAGATAATTATGTTTACCTAATGAACGGGCC 1730 ||| | || ||| | ||| |||| | || |||||| | || || || | ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1731 CACATTGTTTTTCCAGTTCGACTATCTCCTTCGATGATGAT--ACTTATCGGTCT-ATCT 1787 ||||||||||| | || | || |||| ||||| | |||| ||||| ||| Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCG 165527318 Query 1788 GCCCGCGCAGCGGCACCCCTCCCAAAGTAGTTGTCTGCCCATTCTTGCATCTCATCTGGA 1847 ||| |||||||||| |||||||| |||||||||||||||| || ||||| Sbjct 165527317 GCC-GCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGT 165527259 Query 1848 ACGTTCGTGAAG 1859 || || |||||| Sbjct 165527258 ACATTAGTGAAG 165527247 >seq16 Length=188620566 Score = 120 bits (132), Expect = 5e-24 Identities = 229/336 (68%), Gaps = 10/336 (3%) Strand=Plus/Minus Query 1531 CTTTAGTTTGAACTGGCTTCCCGTATTTACAGTTGGACTGCCAGTCCTTTTGGGCCCCTA 1590 |||| | ||||| || || | ||| || || || | |||||||| |||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1591 TCAATTCTTTCCAATGCTTTAATTTCAAATAATTAGGGCTTATGTCATCAATGACGTTAT 1650 ||||| ||||| || ||||| | | | ||| | | || |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA------ACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1651 ATTCGACGTCATTCGAATAGACTCTGCCATTAAAGTCAAGATGTCCACTAAGATAATTAT 1710 |||| || || || || | || | ||| ||||| | || ||||| | |||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1711 GTTTACCTAATGAACGGGCCCACATTGTTTTTCCAGTTCGACTATCTCCTTCGATGATGA 1770 || | || ||||| | ||||||||||| ||||| |||| ||| ||||| || || | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1771 T--ACTTATCGGTCTATCTGCCCGCGCAGCGGCACCCCTCCCAAAGTAGTTGTCTGCCCA 1828 | ||| | ||||| || || | |||| | ||| || | |||||||| Sbjct 2249099 TTGACTGA--GGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 1829 TTCTTGCATCTCATCTGGAACGTTCGTGAAGGAGGA 1864 || |||||| | | ||| ||||||||||| || || Sbjct 2249041 TTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq9 Length=209865144 Score = 80.6 bits (88), Expect = 4e-12 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 1069 GTCCAGATTTGGAAGTTCAGGTATGCTTTGTGTAGACTCAACGCCTTCCTCAGGTTGTAG 1128 ||||| |||| ||||||||||||||| ||||| ||| || | ||| ||||||||| | Sbjct 1759649 GTCCATATTTTGAAGTTCAGGTATGCCTTGTGAAGATCCAGCTGCTTTCTCAGGTTGCTG 1759708 Query 1129 TTGAACCGTATTTG 1142 |||||||||||||| Sbjct 1759709 TTGAACCGTATTTG 1759722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8073468925104