Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_008058.1 Length=2614 Score E Sequences producing significant alignments: (Bits) Value seq16 174 3e-40 seq13 145 1e-31 seq11 129 1e-26 >seq16 Length=188620566 Score = 174 bits (192), Expect = 3e-40 Identities = 221/301 (73%), Gaps = 10/301 (3%) Strand=Plus/Minus Query 1589 CTTTAATTTGAATGGGTTTCCCGTATTTACAGTTGGTCTGCCAGTCTGTCTGGGCCCCAA 1648 |||| || |||| ||||| | ||| || || || | ||||||||| | || || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1649 TGAGCTCTTTCCAGTGTTTCATCTTTAGATAGTGCGGTGGTACGTCATCAATGACGTTGT 1708 | || ||||||||||| | | || ||| | | |||| |||||| ||||| | Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA----ACATTGTGGGTTA--ACGTTATCAATAACGTTAT 2249220 Query 1709 ACATAACATCGTTTGAGTAAACTCTAGAATTGAAATCTAGATGACCACTCAAATAATTAT 1768 | |||||||| ||| |||| ||| ||| || |||| || |||||| |||||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1769 GAATTCCTAATGAACGAGCCCACATCGTCTTTCCCGTTCTTGAATCACCTTCGATGATGA 1828 | |||| ||||| | |||||||| |||||||| ||||||||||||||||| || || | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1829 T--ACTGATAGGTCTTAATGTCCGCGCAGCGCAACCATTTCCAAAATAATCATCAGCCCA 1886 | ||||| ||||| |||| || | ||||| | | |||||||||||| ||||| Sbjct 2249099 TTGACTGA--GGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 1887 T 1887 | Sbjct 2249041 T 2249041 >seq13 Length=197258317 Score = 145 bits (160), Expect = 1e-31 Identities = 218/307 (71%), Gaps = 12/307 (4%) Strand=Plus/Plus Query 1555 CCAGGATTGCATAGCACGATTGATGGAATGCCACCTTTAATTTGAATGGGTTTCCCGTAT 1614 || || |||||||| | ||||| ||| ||||| ||||| | || | || || ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1615 TTACAGTTGGTCTGCCAGTCTGTCTGGGCCCCAATGAGCTCTTTCCAGTGTTTCATCTTT 1674 || ||||| | |||||| | | || || ||||| | |||||||||||| ||| Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTG------CTTG 89851314 Query 1675 AGATAGTGCGGTGGTACGTCATCAATGACGTTGTACATAACATCGTTTGAGTAAAC--TC 1732 | || || ||||||| |||||| |||| |||||| ||| ||||||||| | || | Sbjct 89851315 AAGTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1733 TAGAATTGAAATCTAGATGACCACTCAAATAATTATGAATTCCTAATGAACGAGCCCACA 1792 | |||| || | |||||||| | || ||||| |||| || || | ||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1793 TCGTCTTTCCCGTTCTTGAATCACCTTCGATGATGAT--ACTGATAGGTCTTAATGTCCG 1850 | || || || || || ||||||| ||| ||||| || ||| | ||||| | | ||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCG 89851492 Query 1851 CGCAGCG 1857 ||||||| Sbjct 89851493 CGCAGCG 89851499 >seq11 Length=168460249 Score = 129 bits (142), Expect = 1e-26 Identities = 216/311 (69%), Gaps = 10/311 (3%) Strand=Plus/Minus Query 1549 CCCTCACCAGGATTGCATAGCACGATTGATGGAATGCCACCTTTAATTTGAATGGGTTTC 1608 ||| | || || |||||||||| ||||| ||| ||||| ||||| | || | || || Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1609 CCGTATTTACAGTTGGTCTGCCAGTCTGTCTGGGCCCCAATGAGCTCTTTCCAGTGTTTC 1668 |||||||| |||| | |||||| | | || || ||||| | |||||||||||| Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTG---- 165527494 Query 1669 ATCTTTAGATAGTGCGGTGGTACGTCATCAATGACGTTGTACATAACATCGTTTGAGTAA 1728 | | | || || ||||||| |||||| |||| |||||| | | | ||||||| | Sbjct 165527493 --CATGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1729 ACTCTAGAATTGAAATCTAGATGACCACTCAAATAATTATGAATTCCTAATGAACGAGCC 1788 ||| | ||| || | |||||||| | || ||||| |||| || || | ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1789 CACATCGTCTTTCCCGTTCTTGAATCACCTTCGATGATGAT--ACTGATAGGTCTTAATG 1846 ||||| || || | || || |||| ||||| ||||| | ||| | ||||| | | Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCG 165527318 Query 1847 TCCGCGCAGCG 1857 |||||||||| Sbjct 165527317 GCCGCGCAGCG 165527307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8255865963840