Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_008059.1 Length=2605 Score E Sequences producing significant alignments: (Bits) Value seq13 170 3e-39 seq11 158 2e-35 >seq13 Length=197258317 Score = 170 bits (188), Expect = 3e-39 Identities = 260/366 (71%), Gaps = 12/366 (3%) Strand=Plus/Plus Query 1544 CCAGGATTGCAAAGCACGATTGATGGGATCCCACCTTTAATTTGAACTGGCTTTCCGTAT 1603 || || ||||| || | ||||| ||| || || ||||| | || |||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1604 TTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGCTTTAGCTTT 1663 ||||| || |||||||| | | || || || | || |||||||||||||| | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGA----- 89851315 Query 1664 AGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTTGAGTACACTCTT 1723 || ||||| |||| | |||||| |||| ||| || || || ||||||||| | ||| || Sbjct 89851316 AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1724 GGGT--TGAAGTCCAGATGTCCACTAAGGTAATTGTGTGGGCCTAAGGCACGAGCCCACA 1781 | ||| ||||| ||| |||| | ||| || ||| || || | | ||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1782 TCGTCTTCCCTGTCCTCGAGTCACCTTCTATGATGAT--ACTTACTGGTCTCTCAGGCCG 1839 | || || |||||||| || |||| ||||||||| || |||| ||||||| ||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTT--TGGTCTCATCGGCCG 89851492 Query 1840 CGCAGCGGAACCCCTTCCAAAATATTCGTCCGCCCATGCTTGCATCTCGTCCGGAACTTT 1899 |||||||| |||||| ||| || |||||| ||||| || || || || || Sbjct 89851493 CGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACATT 89851552 Query 1900 AGTGAA 1905 |||||| Sbjct 89851553 AGTGAA 89851558 Score = 111 bits (122), Expect = 3e-21 Identities = 176/249 (71%), Gaps = 5/249 (2%) Strand=Plus/Plus Query 1659 GCTTTAGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTTGAGTACA 1718 |||| | ||||| |||| | |||||| |||| ||| || || | | ||||||| | | Sbjct 172133883 GCTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGA 172133942 Query 1719 CTCTTGGGTTGAAGTCCAGATGTCCACTAAGGTAATTGTGTGGGCCTAAGGCACGAGCCC 1778 || || ||||| ||||| || |||| | ||| || ||| || | || | |||| Sbjct 172133943 CTTTTTTGTTGAGGTCCAATTG-CCACATATGTAGTTATGTCTTCCCATGGATCTTGCCC 172134001 Query 1779 ACATCGTCTTCCCTGTCCTCGAGTCACCTTCTATGATGATACTTAC--TGGTCTCTCAGG 1836 |||| || || ||||| || || | |||||||||||| |||| || ||||||| | || Sbjct 172134002 ACATTGTTTTGCCTGTTCTGGAATTACCTTCTATGAT--TACTGACTTTGGTCTCACCGG 172134059 Query 1837 CCGCGCAGCGGAACCCCTTCCAAAATATTCGTCCGCCCATGCTTGCATCTCGTCCGGAAC 1896 ||| ||||||| | ||||| ||| || |||||| |||||| || || | || Sbjct 172134060 CCGTGCAGCGGCTTGTATACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTAGTAC 172134119 Query 1897 TTTAGTGAA 1905 |||||||| Sbjct 172134120 ATTAGTGAA 172134128 >seq11 Length=168460249 Score = 158 bits (174), Expect = 2e-35 Identities = 262/373 (70%), Gaps = 14/373 (4%) Strand=Plus/Minus Query 1537 ACCCTCACCAGGATTGCAAAGCACGATTGATGGGATCCCACCTTTAATTTGAACTGGCTT 1596 |||| | || || ||||| |||| ||||| ||| || || ||||| | || |||||| Sbjct 165527610 ACCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTT 165527551 Query 1597 TCCGTATTTGCAATTTGACTGCCAGTCCTTC--TGGGCCCCCAGAAGTTCTTTCCAGTGC 1654 ||||||||||| | |||||||| | ||| || || || | || |||||||||||| Sbjct 165527550 GCCGTATTTGCAGTAAGACTGCCAAT--TTCGTTGAGCTCCAATAAACTCTTTCCAGTGC 165527493 Query 1655 TTTAGCTTTAGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTTGAG 1714 | | || ||||| |||| | |||||| |||| ||| || || | | ||||||| Sbjct 165527492 ATGA-----AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAG 165527439 Query 1715 TACACTCTTGGGTTGAAGTCCAGATGTCCACTAAGGTAATTGTGTGGGCCTAAGGCACGA 1774 | ||| || |||| ||||| ||| |||| | ||| || ||| || || | | Sbjct 165527438 AAGACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTT 165527379 Query 1775 GCCCACATCGTCTTCCCTGTCCTCGAGTCACCTTCTATGATGAT--ACTTACTGGTCTCT 1832 |||||||| || || | |||||| || | ||||| |||||| | |||| ||||||| Sbjct 165527378 GCCCACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTT--TGGTCTCA 165527321 Query 1833 CAGGCCGCGCAGCGGAACCCCTTCCAAAATATTCGTCCGCCCATGCTTGCATCTCGTCCG 1892 ||||||||||||| ||||| ||| || |||||| |||||| || || | Sbjct 165527320 TCGGCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTG 165527261 Query 1893 GAACTTTAGTGAA 1905 | || |||||||| Sbjct 165527260 GTACATTAGTGAA 165527248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8227066431408