Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_008236.1 Length=2768 Score E Sequences producing significant alignments: (Bits) Value seq13 134 2e-28 seq11 134 2e-28 seq16 122 2e-24 >seq13 Length=197258317 Score = 134 bits (148), Expect = 2e-28 Identities = 214/304 (70%), Gaps = 6/304 (2%) Strand=Plus/Plus Query 1690 TCCTGGATTGCAAAGGAAGATTGTTGGGATTCCACCTTTAATTTGAATTGGCTTCCCATA 1749 |||||| ||||| || | ||||||||| || || ||||| | || ||||||| | || Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1750 CTTTGTGTTGCTTTGCCAGTCTCGTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGATA 1809 || ||| ||||| | | |||| || || || || || || ||||||| | || Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1810 GTGCGGGTCTACGTCATCAATGACGTTGTACCATGCATCATTGCTGTAGACTTTTGGGC- 1868 || || || |||||| |||| |||||| | || || | |||||||| Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1869 -TCAAGTCAAGATGACCACACAAATAGTTGTGTGGTCCCAGTGATCTTGCCCACATTGTC 1927 | | ||| | ||||||||| | ||||| ||| ||||| ||||||||||||||||| Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1928 TTCCCTGTCCTGCTATCACCCTGTATGACTAT--ACTTACAGGTCTCCATGGCCGCGCAG 1985 || ||||||||| ||||| | ||||| ||| |||| |||||| |||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACTT--TGGTCTCATCGGCCGCGCAG 89851497 Query 1986 CGGC 1989 |||| Sbjct 89851498 CGGC 89851501 Score = 80.6 bits (88), Expect = 5e-12 Identities = 136/194 (70%), Gaps = 5/194 (3%) Strand=Plus/Plus Query 1798 GTGCTTTAGATAGTGCGGGTCTACGTCATCAATGACGTTGTACCATGCATCATTGCTGTA 1857 |||||| | || || || || |||||| |||| |||||| || | || | | Sbjct 172133881 GTGCTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAA 172133940 Query 1858 GACTTTTGGGCTCAAGTCAAGATGACCACACAAATAGTTGTGTGGTCCCAGTGATCTTGC 1917 ||||||| | | | ||| | || ||||| | ||||| ||| ||||| |||||||| Sbjct 172133941 GACTTTTTTGTTGAGGTCCAATTG-CCACATATGTAGTTATGTCTTCCCATGGATCTTGC 172133999 Query 1918 CCACATTGTCTTCCCTGTCCTGCTATCACCCTGTATGACTA--TACTTACAGGTCTCCAT 1975 ||||||||| || ||||| ||| || ||| | ||||| || |||| |||||| Sbjct 172134000 CCACATTGTTTTGCCTGTTCTGGAATTACCTTCTATGATTACTGACTT--TGGTCTCACC 172134057 Query 1976 GGCCGCGCAGCGGC 1989 ||||| |||||||| Sbjct 172134058 GGCCGTGCAGCGGC 172134071 >seq11 Length=168460249 Score = 134 bits (148), Expect = 2e-28 Identities = 212/302 (70%), Gaps = 4/302 (1%) Strand=Plus/Minus Query 1690 TCCTGGATTGCAAAGGAAGATTGTTGGGATTCCACCTTTAATTTGAATTGGCTTCCCATA 1749 |||||| ||||| || | ||||||||| || || ||||| | || ||||||| || || Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1750 CTTTGTGTTGCTTTGCCAGTCTCGTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGATA 1809 || || ||||| | |||||| || || || || || || ||||| | | || Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1810 GTGCGGGTCTACGTCATCAATGACGTTGTACCATGCATCATTGCTGTAGACTTTTGGGCT 1869 || || || |||||| |||| |||||| || | || | |||||||| | | Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425 Query 1870 CAAGTCAAGATGACCACACAAATAGTTGTGTGGTCCCAGTGATCTTGCCCACATTGTCTT 1929 ||| | ||||||||| | ||||| ||| ||||| ||||||||||||||||| || Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Query 1930 CCCTGTCCTGCTATCACCCTGTATGACTAT--ACTTACAGGTCTCCATGGCCGCGCAGCG 1987 | ||||||| || ||| | ||||| | | |||| |||||| |||||||||||| Sbjct 165527364 GCTTGTCCTGGAATTACCTTTTATGATTGTTGACTT--TGGTCTCATCGGCCGCGCAGCG 165527307 Query 1988 GC 1989 || Sbjct 165527306 GC 165527305 >seq16 Length=188620566 Score = 122 bits (134), Expect = 2e-24 Identities = 171/235 (73%), Gaps = 9/235 (4%) Strand=Plus/Minus Query 1757 TTGCTTTGCCAGTCTCGTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGATAGTGCGGG 1816 |||||| ||||||||| ||| || || | |||||||| |||| |||| | | || ||| Sbjct 2249300 TTGCTT-GCCAGTCTCTTTGTGCACCAAGTAATTCCTTCCAGTGTTTTAAACATTGTGGG 2249242 Query 1817 TCTACGTCATCAATGACGTTGTA--CCATGCATCATTGCTGTAGACTTTTGGGCTCAAGT 1874 | |||| |||||| ||||| || ||| |||| || | | || | || |||||| Sbjct 2249241 TTAACGTTATCAATAACGTTATATTCCA--CATCGTTAGAGAAAACCGTAGGATTCAAGT 2249184 Query 1875 CAAGATGACCACACAAATAGTTGTGTGGTCCCAGTGATCTTGCCCACATTGTCTTCCCTG 1934 | | || ||||| ||||| || ||| ||||| ||||||||||||||||||||| || | Sbjct 2249183 CTAAATAACCACTTAAATAATTATGTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGG 2249124 Query 1935 TCCTGCTATCACCCTGTATGACTAT--ACTTACAGGTCTCCATGGCCGCGCAGCG 1987 | || |||||| | || | ||| ||| ||||||| |||| || | |||| Sbjct 2249123 TTCTTGAATCACCTTCAATTATTATTGACT--GAGGTCTCAATGGGCGTGAAGCG 2249071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8745453839160