Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_008283.1 Length=2750 Score E Sequences producing significant alignments: (Bits) Value seq11 93.3 7e-16 seq16 84.2 4e-13 seq13 78.8 2e-11 >seq11 Length=168460249 Score = 93.3 bits (102), Expect = 7e-16 Identities = 170/247 (69%), Gaps = 4/247 (2%) Strand=Plus/Minus Query 1692 CCAGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATTGGCTTGCCGTAT 1751 || || ||||| || | ||| || || || || ||||| | || |||||||||||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1752 TTTGTGTTGCTTTGCCAGTTCCTCTGGGCCCCCATAAACTCTTTAAAGTGCTTTA--GAT 1809 || || ||||| || | || || || ||||||||||| ||||| | | || Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1810 AGTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCGTCATTGTTGTATACCTTGGGGC 1869 |||| ||| | |||||| |||| |||||| |||| || | | || || | Sbjct 165527483 TGTGGTGGT--ATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGT 165527426 Query 1870 TCAAGTCTAGATGTCCACAGAGATAATTATGGAGGCCCAATGATCTAGCCCACATTGTTT 1929 | ||| | ||| ||||| | || ||||| ||||| ||||| ||||||||||||| Sbjct 165527425 TGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTT 165527366 Query 1930 TGCCTGT 1936 ||| ||| Sbjct 165527365 TGCTTGT 165527359 >seq16 Length=188620566 Score = 84.2 bits (92), Expect = 4e-13 Identities = 129/181 (71%), Gaps = 5/181 (3%) Strand=Plus/Minus Query 1758 TTGCTTTGCCAGTTCCTCTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAGTGGGGG 1817 |||||| |||||| || || || || | || || || |||| |||| | | || ||| Sbjct 2249300 TTGCTT-GCCAGTCTCTTTGTGCACCAAGTAATTCCTTCCAGTGTTTTAAACATTGTGGG 2249242 Query 1818 TCGACGTCATCAATGACGTTGTA--CCAGGCGTCATTGTTGTATACCTTGGGGCTCAAGT 1875 | |||| |||||| ||||| || ||| | || || | | ||| | || |||||| Sbjct 2249241 TTAACGTTATCAATAACGTTATATTCCA--CATCGTTAGAGAAAACCGTAGGATTCAAGT 2249184 Query 1876 CTAGATGTCCACAGAGATAATTATGGAGGCCCAATGATCTAGCCCACATTGTTTTGCCTG 1935 ||| || |||| | ||||||||| ||||||||||| ||||||||||| || || | Sbjct 2249183 CTAAATAACCACTTAAATAATTATGTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGG 2249124 Query 1936 T 1936 | Sbjct 2249123 T 2249123 >seq13 Length=197258317 Score = 78.8 bits (86), Expect = 2e-11 Identities = 226/341 (66%), Gaps = 10/341 (3%) Strand=Plus/Plus Query 2243 AGATCTGCCATCTATCTGAAATTCTCCCCATTCGATTGAATCACCGTCTTTGTCCATGTA 2302 |||| | |||| | ||||||| ||||| |||||| |||||||||||| | |||||| Sbjct 172134327 AGATGTTCCATGTTTCTGAAACATCCCCCAGTCGATTACATCACCGTCTTTCTGCATGTA 172134386 Query 2303 CGCCTTGACATCGGAACTTGACTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGCCCT 2362 ||||| | |||| || ||||| ||| |||| ||||| || | | | | | Sbjct 172134387 TCTTCTGACAAAGAAACTGGATTTAGCAGACTGTATGTATGGATGACAAATTTCAGACGT 172134446 Query 2363 GGTTGAG-GATAGCAGGTCGAAGAATCTGTTGTTGGTG-CAGACGTATTTTCCTTCGAAT 2420 ||| | ||| | ||||| |||||||| | | | || || | |||| ||| | Sbjct 172134447 ATTTGGGTGATTG-AGGTCAAAGAATCT-TGGATTTTGACATTTGAATTTCTTTTCCATC 172134504 Query 2421 TGTATGAGCACATGGAGATGAGGGCTCCCATCTTCGTGAAGTTCTCTACAGATCTTGACA 2480 || || | ||||| |||||||| | | |||||||| |||||| | ||||| || | Sbjct 172134505 TGCATCAAAACATGAAGATGAGGCTTGTCGTCTTCGTGCAGTTCTATGCAGATAGCGATA 172134564 Query 2481 AACA-----GCTTGTTGACAGGAGTGTTAAAAGATTTTAATTGTTCCAGTGCTTCTTCTT 2535 | | | | | ||| | | || || || ||| | |||||| || | ||||| Sbjct 172134565 TATATACTTGATCGCTGAAGGAATTGGTAGAA-CTTTCAGTTGTTCAAGATAATATTCTT 172134623 Query 2536 TTGTTAGAGAACAGTGTGGATATGTTAAGAAATAGTTTTTG 2576 | | || | | || | ||| ||||| | ||| ||||| ||| Sbjct 172134624 TGGATACATAGCATTTTGGGTATGTGATGAAGTAGTTCTTG 172134664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8691058898368