Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_008299.1 Length=2759 Score E Sequences producing significant alignments: (Bits) Value seq16 125 1e-25 seq13 102 1e-18 seq11 93.3 7e-16 >seq16 Length=188620566 Score = 125 bits (138), Expect = 1e-25 Identities = 188/265 (71%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 1727 CTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCA 1786 |||| || ||||| || |||| |||||| |||| ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1787 TGAATTCTTTAAAGTGCTTTAGGTAGTGGGGATCGACGTCATCAATGACGTTGTA--CCA 1844 ||||| || |||| |||| | || || | |||| |||||| ||||| || ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1845 GGCCTCGTTGCTGTAAACCTTTGGACTAAGGTCTAGATGACCACACAGATAATTGTGTGG 1904 | ||||| | ||||| | ||| | | ||||| || ||||| | |||||| ||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1905 ACCCAGTGACCTGGCCCACATTGTCTTCCCCGTACGACTATCACCCTCTATGACAATACT 1964 |||| ||| || |||||||||||||| || || | |||||| || || | || Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1965 TTTAGGTCTCAATGGCCGCGCAGCG 1989 | |||||||||||| || | |||| Sbjct 2249095 CTGAGGTCTCAATGGGCGTGAAGCG 2249071 >seq13 Length=197258317 Score = 102 bits (112), Expect = 1e-18 Identities = 209/305 (69%), Gaps = 8/305 (3%) Strand=Plus/Plus Query 1692 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1751 |||||| ||||| || | ||| || || || || ||||| | || |||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1752 CTTTGTATTT-GATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGT 1810 |||| | || || ||||| | ||| || || || || ||||| ||||||| | || Sbjct 89851260 -TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGT 89851318 Query 1811 AGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCCTCGTTGCTGTAAACCTTTGGAC 1870 | || || | |||||| |||| |||||| | ||||| | | || ||| Sbjct 89851319 ATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTT 89851378 Query 1871 --TAAGGTCTAGATGACCACACAGATAATTGTGTGGACCCAGTGACCTGGCCCACATTGT 1928 | ||||| | ||||||||| | || || ||| |||| || || ||||||||||| Sbjct 89851379 CTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGT 89851438 Query 1929 CTTCCCCGTACGACTATCACCCTCTATGACAAT--ACTTTTAGGTCTCAATGGCCGCGCA 1986 || || || | ||||| ||||||| || ||||| ||||||| ||||||||| Sbjct 89851439 TTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGCA 89851496 Query 1987 GCGGC 1991 ||||| Sbjct 89851497 GCGGC 89851501 >seq11 Length=168460249 Score = 93.3 bits (102), Expect = 7e-16 Identities = 205/303 (68%), Gaps = 6/303 (2%) Strand=Plus/Minus Query 1692 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1751 |||||| ||||| || | ||| || || || || ||||| | || |||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1752 CTTTGTATTT-GATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGT 1810 |||| | | || ||||| | | ||| || || || || ||||| ||||| | | || Sbjct 165527544 -TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGT 165527486 Query 1811 AGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCCTCGTTGCTGTAAACCTTTGGAC 1870 | || || | |||||| |||| |||||| || | ||| | | || ||| Sbjct 165527485 ATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGT 165527426 Query 1871 TAAGGTCTAGATGACCACACAGATAATTGTGTGGACCCAGTGACCTGGCCCACATTGTCT 1930 | |||| | ||||||||| | || || ||| |||| || || ||||||||||| | Sbjct 165527425 TGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTT 165527366 Query 1931 TCCCCGTACGACTATCACCCTCTATGACAAT--ACTTTTAGGTCTCAATGGCCGCGCAGC 1988 | | || | || ||| | ||||| | ||||| ||||||| ||||||||||| Sbjct 165527365 TGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGC 165527308 Query 1989 GGC 1991 ||| Sbjct 165527307 GGC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8719858430800