Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_008304.1 Length=2613 Score E Sequences producing significant alignments: (Bits) Value seq16 152 8e-34 seq13 118 2e-23 seq11 111 3e-21 >seq16 Length=188620566 Score = 152 bits (168), Expect = 8e-34 Identities = 229/324 (71%), Gaps = 10/324 (3%) Strand=Plus/Minus Query 1595 CTTTAATTTGAACCGGCTTTCCATATTTACAGTTGGACTGCCAGTCCTTTTGGGCCCCAA 1654 |||| || |||||||| |||| || || || || | |||||||| |||| || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1655 TCAATTCCTTCCAGTGCTTTAGCTTTAAGTATTGCGGATTGACATCATCTATGACGTTAT 1714 |||||||||||||| |||| | |||| || || || | ||| || ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTA------AACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1715 ACTCCACTTGATTGGAGTATACCCTAGAATTGAAATCAAGATGACCGCTCAGATAATTAT 1774 | ||||| | || ||| | ||| ||| ||| || || | || ||| || | |||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1775 GTGGGCCTAAAGCACGAGCCCACATTGTCTTGCCCGTTCGTGAATCCCCTTCGACTATCA 1834 || || || | | |||||||||||||| || |||| |||||| ||||| | ||| | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1835 --AACTAATCGGTCTCTCTGGCCGCGCAGCGGCACCCCTCCCAAAATAATCATCCGCCCA 1892 ||| | |||||| ||| || | |||| | |||||||||||| ||||| Sbjct 2249099 TTGACTGA--GGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 1893 CTCTTGCATCTCTTCTGGCACATT 1916 | |||||| ||| ||| || || Sbjct 2249041 TTTTTGCATAACTTGTGGTACGTT 2249018 >seq13 Length=197258317 Score = 118 bits (130), Expect = 2e-23 Identities = 245/362 (68%), Gaps = 12/362 (3%) Strand=Plus/Plus Query 1559 CTCCTGGATTGCACAGCACGATTGATGGGATACCTCCTTTAATTTGAACCGGCTTTCCAT 1618 ||||||| ||||| || | ||||| ||| || |||||||| | || ||||| | | Sbjct 89851199 CTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGT 89851258 Query 1619 ATTTACAGTTGGACTGCCAGTCCTTTTGGGCCCCAATCAATTCCTTCCAGTGCTTTAGCT 1678 |||| ||||| |||||||| | | ||| || ||||| || || ||||||| ||| Sbjct 89851259 ATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGT------GCT 89851312 Query 1679 TTAAGTATTGCGGATTGACATCATCTATGACGTTATACTCCACTTGATTGGAGTATAC-- 1736 | |||||||| || | ||||| |||| ||| || || || | || ||| | || Sbjct 89851313 TGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTT 89851372 Query 1737 CCTAGAATTGAAATCAAGATGACCGCTCAGATAATTATGTGGGCCTAAAGCACGAGCCCA 1796 | |||| || | |||||| | | || |||||| || |||| | ||||| Sbjct 89851373 TTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCA 89851432 Query 1797 CATTGTCTTGCCCGTTCGTGAATCCCCTTCGACTATCA--AACTAATCGGTCTCTCTGGC 1854 |||||| || || || | ||||| | ||| | || | ||| | |||||| ||| Sbjct 89851433 CATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGC 89851490 Query 1855 CGCGCAGCGGCACCCCTCCCAAAATAATCATCCGCCCACTCTTGCATCTCTTCTGGCACA 1914 ||||||||||| ||||| || ||| ||||| | ||||| |||||||| ||| Sbjct 89851491 CGCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACA 89851550 Query 1915 TT 1916 || Sbjct 89851551 TT 89851552 >seq11 Length=168460249 Score = 111 bits (122), Expect = 3e-21 Identities = 244/364 (67%), Gaps = 10/364 (3%) Strand=Plus/Minus Query 1555 CCCTCTCCTGGATTGCACAGCACGATTGATGGGATACCTCCTTTAATTTGAACCGGCTTT 1614 ||| ||||||| ||||| |||| ||||| ||| || |||||||| | || ||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1615 CCATATTTACAGTTGGACTGCCAGTCCTTTTGGGCCCCAATCAATTCCTTCCAGTGCTTT 1674 || ||||| |||| |||||||| | ||| || ||||| || || ||||||||| | Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATG 165527490 Query 1675 AGCTTTAAGTATTGCGGATTGACATCATCTATGACGTTATACTCCACTTGATTGGAGTAT 1734 | ||||||| || | ||||| |||| ||| || || | | || ||| | Sbjct 165527489 A------AGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1735 ACCCTAGAATTGAAATCAAGATGACCGCTCAGATAATTATGTGGGCCTAAAGCACGAGCC 1794 || | ||| || | |||||| | | || |||||| || |||| | ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1795 CACATTGTCTTGCCCGTTCGTGAATCCCCTTCGACTATCAA--ACTAATCGGTCTCTCTG 1852 |||||||| |||| || | |||| |||| | || ||| | |||||| | Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCG 165527318 Query 1853 GCCGCGCAGCGGCACCCCTCCCAAAATAATCATCCGCCCACTCTTGCATCTCTTCTGGCA 1912 ||||||||||||| ||||| || ||| ||||| ||||||| |||||||| | Sbjct 165527317 GCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTA 165527258 Query 1913 CATT 1916 |||| Sbjct 165527257 CATT 165527254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8252666015792