Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_008316.1 Length=2767 Score E Sequences producing significant alignments: (Bits) Value seq13 104 4e-19 seq11 89.7 9e-15 seq16 78.8 2e-11 >seq13 Length=197258317 Score = 104 bits (114), Expect = 4e-19 Identities = 205/301 (68%), Gaps = 2/301 (1%) Strand=Plus/Plus Query 1673 CCAGGATTGCAGAGGAAGATAGTGGGAATTCCTCCTTTAATTTGAATTGGTTTCCCGTAC 1732 || || ||||| || | ||| || || || |||||||| | || |||| || |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1733 TTTGTGTTGCTTTGCCAGTCCCTTTGGGCTCCCATGAACTCTTTAAAATGCTTTAGGTAG 1792 || ||| ||||| | ||| ||||| || |||||||| | ||||| | ||| Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1793 TGGGGATCGACGTCATCGATGACGTTGTACCAAGCATCATTACTGTAGAC-CTTTGGACT 1851 || || | ||||||||||| |||||| | | || || | |||| ||| || Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1852 T-AGATCCAAGTGTCCACATAAATAGTTGTGTGGGCCTAAACATCTGGCCCACATTGTCT 1910 | || |||| || ||||||| ||||| ||| || ||| |||| ||||||||||| | Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1911 TCCCTGTTCTACTCTCTCCCTCTATCACAATACTCTTTGGCCGCCATGGCCGCGCAGCGG 1970 | ||||| || || | ||||| | || |||||| | | ||||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGCGG 89851500 Query 1971 C 1971 | Sbjct 89851501 C 89851501 >seq11 Length=168460249 Score = 89.7 bits (98), Expect = 9e-15 Identities = 199/299 (67%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 1673 CCAGGATTGCAGAGGAAGATAGTGGGAATTCCTCCTTTAATTTGAATTGGTTTCCCGTAC 1732 || || ||||| || | ||| || || || |||||||| | || |||| || ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1733 TTTGTGTTGCTTTGCCAGTCCCTTTGGGCTCCCATGAACTCTTTAAAATGCTTTAGGTAG 1792 || || ||||| | | ||| ||||| || |||||||| | ||| | | ||| Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1793 TGGGGATCGACGTCATCGATGACGTTGTACCAAGCATCATTACTGTAGACCTTTGGACTT 1852 || || | ||||||||||| |||||| ||| | || | |||| ||| | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1853 AGATCCAAGTGTCCACATAAATAGTTGTGTGGGCCTAAACATCTGGCCCACATTGTCTTC 1912 | |||| || ||||||| ||||| ||| || ||| |||| ||||||||||| || Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1913 CCTGTTCTACTCTCTCCCTCTATCACAATACTCTTTGGCCGCCATGGCCGCGCAGCGGC 1971 | ||| || | || | ||| | | |||||| | | |||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCGCAGCGGC 165527305 >seq16 Length=188620566 Score = 78.8 bits (86), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 1707 CTTTAATTTGAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCTCCCA 1766 |||| || |||| ||||| | |||||| || ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1767 TGAACTCTTTAAAATGCTTTAGGTAGTGGGGATCGACGTCATCGATGACGTTGTA--CCA 1824 || || || | || |||| | || || | |||| ||| || ||||| || ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1825 AGCATCATTACTGTAGACCTTTGGACTTAGATCCAAGTGTCCACATAAATAGTTGTGTGG 1884 |||| ||| | | ||| | ||| | | || || | |||| |||||| || ||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1885 GCCTAAACATCTGGCCCACATTGTCTTCCCTGTTCT 1920 || || |||| |||||||||||||| || ||||| Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCT 2249120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8742253892640