Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_008317.1 Length=2784 Score E Sequences producing significant alignments: (Bits) Value seq13 125 1e-25 seq16 123 4e-25 seq11 120 5e-24 >seq13 Length=197258317 Score = 125 bits (138), Expect = 1e-25 Identities = 212/304 (70%), Gaps = 6/304 (2%) Strand=Plus/Plus Query 1704 TCCTGGATTGCAGAGGAAGATTGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCATA 1763 |||||| ||||| || | ||||||||| || || ||||| | || |||| || | || Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1764 CTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATA 1823 ||| ||| ||||| | ||| || || || || ||||| ||||||| | || Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1824 GTGCGGGTCTACGTCATCAATGACGTTATACCATGCGTCATTGCTGTAGACCTTTGGAC- 1882 || || || |||||| |||| ||| || |||| || | |||| ||| Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1883 -TCAAGTCAAGATGACCACACAAGTAGTTGTGTGGCCCTAATGACCTTGCCCACATTGTC 1941 | | ||| | ||||||||| | |||||| ||| || || || |||||||||||||| Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1942 TTGCCTGTCCTGCTATCACCCTCTATGACTAT--ACTTACAGGTCTCCATGGCCGCGCAG 1999 || ||||||||| ||||| ||||||| ||| |||| |||||| |||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACTT--TGGTCTCATCGGCCGCGCAG 89851497 Query 2000 CGGC 2003 |||| Sbjct 89851498 CGGC 89851501 >seq16 Length=188620566 Score = 123 bits (136), Expect = 4e-25 Identities = 190/267 (71%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 1739 CTTTAATTTGAATTGGTTTCCCATACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCA 1798 |||| || |||| ||||| | |||||| || ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1799 TGAATTCTTTAAAGTGCTTTAGATAGTGCGGGTCTACGTCATCAATGACGTTATA--CCA 1856 ||||| || |||| |||| | | || |||| |||| |||||| |||||||| ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1857 TGCGTCATTGCTGTAGACCTTTGGACTCAAGTCAAGATGACCACACAAGTAGTTGTGTGG 1916 | || || | | ||| | ||| ||||||| | || ||||| || || || ||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1917 CCCTAATGACCTTGCCCACATTGTCTTGCCTGTCCTGCTATCACCCTCTATGACTAT--A 1974 || ||||| ||||||||||||||||| || || || |||||| || || | ||| | Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1975 CTTACAGGTCTCCATGGCCGCGCAGCG 2001 || ||||||| |||| || | |||| Sbjct 2249095 CT--GAGGTCTCAATGGGCGTGAAGCG 2249071 >seq11 Length=168460249 Score = 120 bits (132), Expect = 5e-24 Identities = 209/302 (69%), Gaps = 4/302 (1%) Strand=Plus/Minus Query 1704 TCCTGGATTGCAGAGGAAGATTGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCATA 1763 |||||| ||||| || | ||||||||| || || ||||| | || |||| || || || Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1764 CTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATA 1823 ||| || ||||| | | ||| || || || || ||||| ||||| | | || Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1824 GTGCGGGTCTACGTCATCAATGACGTTATACCATGCGTCATTGCTGTAGACCTTTGGACT 1883 || || || |||||| |||| ||| || |||| || | |||| ||| | Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425 Query 1884 CAAGTCAAGATGACCACACAAGTAGTTGTGTGGCCCTAATGACCTTGCCCACATTGTCTT 1943 ||| | ||||||||| | |||||| ||| || || || |||||||||||||| || Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Query 1944 GCCTGTCCTGCTATCACCCTCTATGACTAT--ACTTACAGGTCTCCATGGCCGCGCAGCG 2001 || ||||||| || ||| | ||||| | | |||| |||||| |||||||||||| Sbjct 165527364 GCTTGTCCTGGAATTACCTTTTATGATTGTTGACTT--TGGTCTCATCGGCCGCGCAGCG 165527307 Query 2002 GC 2003 || Sbjct 165527306 GC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8796652983480