Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_008329.1 Length=2752 Score E Sequences producing significant alignments: (Bits) Value seq16 107 3e-20 seq13 105 1e-19 seq11 91.5 3e-15 >seq16 Length=188620566 Score = 107 bits (118), Expect = 3e-20 Identities = 167/233 (72%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 1733 CTTTAATTTGAACTGGCTTCCCGTACTT--AGTGTTGCTTTGCCAGTCCCTTTGGGCCCC 1790 |||| || ||||| || || | |||||| | | |||||| ||||||| ||||| || || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACT-TTGCTT-GCCAGTCTCTTTGTGCACC 2249276 Query 1791 CATGAATTCTTTAAAGTGCTTTAGATAGTGGGGGTCTACGTCATCAATGACGTTATA--C 1848 | ||||| || |||| |||| | | || |||| |||| |||||| |||||||| | Sbjct 2249275 AAGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTC 2249216 Query 1849 CAAGCATCATTACTGTATACTTTTGGGCTTAGATCAAGATGTCCACACAAATAATTGTGT 1908 || |||| ||| | | || | || | | || | || |||| |||||||| ||| Sbjct 2249215 CA--CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGT 2249158 Query 1909 GGTCCCAGTGATCTGGCCCACATTGTTTTACCTGTACGACTATCACCTTCTAT 1961 ||||| |||||| ||||||||||| || || || | ||||||||| || Sbjct 2249157 CTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAAT 2249105 >seq13 Length=197258317 Score = 105 bits (116), Expect = 1e-19 Identities = 208/303 (69%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 1699 CCTGGATTGCAAAGGAAGATACTTGGGATTCCACCTTTAATTTGAACTGGCTTCCCGTAC 1758 ||||| ||||| || | ||| |||| || || ||||| | || |||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1759 TTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAG 1818 || ||| ||||| | ||| || || || || ||||| ||||||| | || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1819 TGGGGGTCTACGTCATCAATGACGTTATACCAAGCATCATTACTGTATACTTTTGGG-CT 1877 || || || |||||| |||| ||| || | | || || | | |||||| || Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1878 T-AGATCAAGATGTCCACACAAATAATTGTGTGGTCCCAGTGATCTGGCCCACATTGTTT 1936 | || || | ||| ||||| | || || ||| ||||| ||||| ||||||||||||| Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1937 TACCTGTACGACTATCACCTTCTATCACAAT--ACTTTTGGGTCTCCAAGGCCGCGCAGC 1994 ||||||| | ||||| |||||| | || ||||| |||||| ||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGCAGC 89851498 Query 1995 GGC 1997 ||| Sbjct 89851499 GGC 89851501 Score = 77.0 bits (84), Expect = 6e-11 Identities = 215/328 (66%), Gaps = 4/328 (1%) Strand=Plus/Plus Query 2264 TCTGAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTCTCCAGGTAGGACTTGACGTCGG 2323 |||||||| |||||||||| || ||||| |||| || ||| |||| | Sbjct 172134341 TCTGAAACATCCCCCAGTCGATTACATCACCGTCTTTCTGCATGTATCTTCTGACAAAGA 172134400 Query 2324 AGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGAGACCA 2383 | ||||||||||| ||| |||| ||||| || | | ||| | ||||| | Sbjct 172134401 AACTGGATTTAGCAGACTGTATGTATGGATGACAAATTTCAGACGTATTTGGGTGATTGA 172134460 Query 2384 GGTCGAAGAATCTGTTATTTTGGCATTTGTATTTGCCTTCGAATTGGATAAGCACGTGGA 2443 |||| |||||||| |||||| |||||| |||| ||| | || || | || || | Sbjct 172134461 GGTCAAAGAATCTTGGATTTTGACATTTGAATTTCTTTTCCATCTGCATCAAAACATGAA 172134520 Query 2444 GATGAGGGCTCCCATCTTCATGAAGTTCGCTGCAGattttgatgtattt--tttat--tt 2499 ||||||| | | ||||| || ||||| ||||||| ||| ||| | || || | Sbjct 172134521 GATGAGGCTTGTCGTCTTCGTGCAGTTCTATGCAGATAGCGATATATATACTTGATCGCT 172134580 Query 2500 gttggggtgtttaggttttttatttgGGAAAGTGCCTCTTCTTTAGTAAGAGAGCATTGT 2559 | || | ||| ||| | ||| ||| | |||||| | | | |||||| | Sbjct 172134581 GAAGGAATTGGTAGAACTTTCAGTTGTTCAAGATAATATTCTTTGGATACATAGCATTTT 172134640 Query 2560 GGATAAGTGAGGAAAAAGTTTTTGGCAT 2587 || || |||| ||| |||| ||||||| Sbjct 172134641 GGGTATGTGATGAAGTAGTTCTTGGCAT 172134668 >seq11 Length=168460249 Score = 91.5 bits (100), Expect = 3e-15 Identities = 202/301 (67%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 1699 CCTGGATTGCAAAGGAAGATACTTGGGATTCCACCTTTAATTTGAACTGGCTTCCCGTAC 1758 ||||| ||||| || | ||| |||| || || ||||| | || |||||| ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1759 TTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAG 1818 || || ||||| | | ||| || || || || ||||| ||||| | | || Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1819 TGGGGGTCTACGTCATCAATGACGTTATACCAAGCATCATTACTGTATACTTTTGGGCTT 1878 || || || |||||| |||| ||| || ||| | || | | |||||| | | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1879 AGATCAAGATGTCCACACAAATAATTGTGTGGTCCCAGTGATCTGGCCCACATTGTTTTA 1938 | || | ||| ||||| | || || ||| ||||| ||||| |||||||||||||| Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1939 CCTGTACGACTATCACCTTCTATCACAAT--ACTTTTGGGTCTCCAAGGCCGCGCAGCGG 1996 | ||| | || ||||| ||| | | ||||| |||||| ||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGCGG 165527306 Query 1997 C 1997 | Sbjct 165527305 C 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8697458794464