Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_008373.1 Length=2744 Score E Sequences producing significant alignments: (Bits) Value seq16 127 4e-26 seq13 109 1e-20 >seq16 Length=188620566 Score = 127 bits (140), Expect = 4e-26 Identities = 161/217 (74%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 1720 CTTTAATTTGAATTGGTTTCCCGTACTT-CGTGTTGCTTTGCCAGTCTCGTTGGGCCCCC 1778 |||| || |||| ||||| | |||||| | |||||| ||||||||| ||| || || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTT-GCCAGTCTCTTTGTGCACCA 2249275 Query 1779 ATGAATTCTTTAAAGTGCTTTAGATAGTGGGGATCTACGTCATCAATGACGTTGTA--CC 1836 | ||||| || |||| |||| | | || || | |||| |||||| ||||| || || Sbjct 2249274 AGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCC 2249215 Query 1837 AGGCATCATTAGAATACACCTTGGGACTCAAGTCCAGGTGACCACATAAATAGTTATGTG 1896 | |||| ||||| | ||| | ||| ||||||| | | ||||| |||||| |||||| Sbjct 2249214 A--CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTC 2249157 Query 1897 GACCCAAAGAACGAGCCCACATTGTCTTGCCGGTTCT 1933 ||||| || | |||||||||||||| |||||||| Sbjct 2249156 TTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCT 2249120 >seq13 Length=197258317 Score = 109 bits (120), Expect = 1e-20 Identities = 206/302 (68%), Gaps = 2/302 (1%) Strand=Plus/Plus Query 1685 TCCTGGATTGCATAGGAAGATTGTTGGGATACCTCCTTTAATTTGAATTGGTTTCCCGTA 1744 |||||| |||||||| | ||||||||| || |||||||| | || |||| || |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1745 CTTCGTGTTGCTTTGCCAGTCTCGTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATA 1804 || ||| ||||| | | |||| || || || || ||||| ||||||| | || Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1805 GTGGGGATCTACGTCATCAATGACGTTGTACCAGGCATCATT--AGAATACACCTTGGGA 1862 || || || |||||| |||| |||||| | || || |||| || || Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1863 CTCAAGTCCAGGTGACCACATAAATAGTTATGTGGACCCAAAGAACGAGCCCACATTGTC 1922 | | ||||| |||||||||| ||||||||| |||||||| | ||||||||||| Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1923 TTGCCGGTTCTACTCTCGCCCTCGATTACAATACTATTGGGCCTAAAAGGCCGCGCAGCG 1982 || || || || || | || || | || || || || | |||||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGCG 89851499 Query 1983 GC 1984 || Sbjct 89851500 GC 89851501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8671859210080